| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0864 |
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| Symbol | |
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| ID | 4709608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 932224 |
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| End bp | 936585 |
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| Gene Length | 4362 bp |
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| Protein Length | 1453 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639855323 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001002442 |
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| Protein GI | 121997655 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.213662 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCGGG GTCCGAGCCG CCGGGCTAGC GGCGGCGACT TGAGATCAAC GCGCGAGCGG
GCAGCAGACA TGAGAGATCT TCTCAACCTT TTCAAGCAGC CGGGTGCTCA GCTGGAGGAC
TTCGATGCGA TTCGGATCGG GCTGGCATCG CCCGAGATGA TCCGCTCCTG GTCCTACGGC
GAGGTCAAGA AGCCGGAGAC CATCAACTAC CGCACCTTCA AGCCGGAGCG TGACGGGCTC
TTCTGCGCCA AGATCTTCGG CCCGGTGAAG GACTACGAGT GCCTGTGCGG CAAGTACAAG
CGCCTCAAGC ACCGCGGCGT GGTCTGTGAG AAGTGCGGCG TCGAGGTGAC CGTCGCCAAG
GTACGGCGCG AGCGCATGGG CCATATCGAC CTGGCCAGCC CCGTGGCGCA CATCTGGTTC
CTCAAGAGCC TGCCGTCGCG CATCGGCCTG CTGCTGGACA TGACCCTACG CGACGTCGAG
CGGGTGCTCT ACTTCGAGGC GTACATCGTC ATCGAGCCCG GCATGACGCC GCTCGAGCAG
GGGCAGCTGC TCACCGACGA GCAGTACCTG GAGGCGGTCG AGGAGCACGG CGACGAGTTC
GACGCCCGCA TGGGCGCCGA GGCGGTGCTC GAGATCCTCA AGGGCATGGA CCTGGAGGCC
GAGGCTCGGC GTCTGCGCGA CGACATCGAG GCCACCGGCT CTGAGTCCAA GATCAAGCGC
CTGTCCAAGC GGCTCAAGCT CCTCGAGGCC TTCCTTGAGT CGGGGAACAA GCCCGAGTGG
CTGATCATGA CCGTCCTGCC CGTGCTGCCG CCGGACCTGC GGCCGCTGGT GCCCCTCGAC
GGCGGCCGGT TCGCCACGTC GGACCTCAAC GACCTCTACC GGCGGGTGAT CAACCGCAAC
AACCGCCTCA AGCGGCTGCT CGAACTGGCC GCGCCGGACA TCATCGTGCG CAACGAGAAG
CGCATGCTCC AGGAGTCCGT CGACGCCCTG CTCGACAACG GTCGCCGCGG CCGGGCGATC
ACGGGCACCA ACAAGCGCCC GCTCAAGTCC CTGGCCGACA TGATCAAGGG CAAGCAGGGT
CGCTTCCGCC AGAACCTGCT GGGCAAGCGT GTCGACTACT CCGGCCGCTC GGTCATCGTC
GTCGGCCCTA CCCTGCGCCT GCACCAGTGT GGTCTGCCCA AGCGCATGGC CCTGGAGCTG
TTCAAGCCGT TCATCTTCTC CAAGCTGCAG CGCCGCGGCC TGGCCACCAC CATCAAGGCG
GCCAAGAAGA TGGTCGAGCG CGAGACCGGC GAGGTCTGGG ACATCCTCGA CGAGGTCATC
CGCGAGCACC CGGTGCTGCT CAACCGCGCG CCGACGCTCC ACCGCCTGGG TATCCAGGCC
TTCGAGCCGG TGCTCATCGA GGGCAAGGCC ATCCAGCTCC ACCCGCTGGT GTGCACCGCC
TACAACGCCG ACTTCGACGG CGACCAGATG GCGGTCCACG TGCCGCTGTC GCTCGAGGCG
CAGCTCGAGT CCCGGGCGAT GATGATGTCC ACCAACAACA TCCTCTCGCC GGCCTCGGGC
GAGCCGATCA TCGTCCCCTC CCAGGACGTG GTGCTCGGCA TCTATTACAT GACCCGCGAG
CGCGTAAACG CCCGCGGCGA AGGCATGCGC CTGGCCGGCG TCGAAGAGGT TCACCGCGCC
TACCAGACCG GCGCCGCGGA ACTCGGCGCG CGGGTCGAGG TGCGCATCCG CGAGCGGGTC
TTCGACGACA GCGGTGAGAT GGTCGAGCGC GTTCAGCGCC GGCAGACCAC CATCGGCCGG
GCCCTGCTGT TCGACATCGT GCCGGACGGT CTGCCCTTCG AGGCCGTCGA CCGTGAGCTC
GACAAGAAAG GCGTCTCGGG GCTGGTGAAC GCCTGCTACC GCCGCGTCGG CCTGAAGGGC
ACGGTGGTCT TCGCTGACCA GCTGATGTAC ACCGGCTTCT TCTATTCCAC CAAGGCCGGC
GTCTCCATCG GTGTCGACGA CATGGAGGTG CCCACCGACA AGGAAGAGGC CCTGCGCTCG
GCCGAGGAAG AGGTCCGCGA GATCGAGGAC CAGTACGCCT CGGGCCTGGT CACCAGCGGC
GAGCGTTACA ACAAGGTCGT CGACATCTGG GCGCACACCA ACGACCAGGT GGCTGGCGCC
ATGATGGAGA AGATGGGCAA GGAGACGGTC GTCGATGCCG AGGGCAACGA GACCGAGCAG
AAGTCGCTCA ACTCCATCTT CATCATGGCC GACTCCGGCG CCCGTGGTTC GGCGGCGCAG
ATCCGTCAGC TCGCCGGCAT GCGCGGCCTG ATGGCCAAGC CGGACGGCTC GATCATCGAG
ACGCCGATCA CCGCCAACTT CCGCGAGGGC CTCAACGTCC TGCAGTACTT CATCTCCACC
CACGGCGCCC GTAAGGGTCT GGCCGACACG GCGCTAAAGA CCGCCAACTC CGGCTACCTG
ACCCGCCGCT TGGTGGACGT CTCCCAGGAC CTGGTGGTCA CCGAGGAAGA CTGCGGCACC
ACCGATGGGT TGGTGCAGAC CCCGATCATT GAGGGCGGCG ACGTGGTCGA GACCCTCGCT
GAGCGGGTGC TGGGCCGCGT GGTGGCCGAG GACGTGGCCG TACCGGGGAG CACCGACATC
GCCGTCGAGG CCGGGACGCT GCTCGACGAG GACTGGGTCG AGCGCCTCGA GCGCATGGGC
GTCGACGAGA TCAAGGTCCG CTCCGCGGTC ACCTGTGAGA CCCGTCACGG CGTCTGCGCC
AAGTGCTACG GCCGCGACCT GGCCCGTGGC CACGGCGTGA ACATCGGCGA GGCCGTCGGC
GTCATCGCCG CGCAGTCCAT CGGCGAGCCG GGTACGCAGC TGACCATGCG GACCTTCCAC
ATTGGCGGCG CCGCCTCGCG GGCGGCCGCG GTCTCCCAGG TGGAGGTGCG CAACACCGGT
AAGGCGCGAC TGCACAACAT CAAGACCGTG CAGCACCACT CCGGCAGCTA CGTGGCCGTG
TCGCGCTCCG GCGAGCTCAC CGTCATGGAC GAGTACGGCC GCGAGCGGGA GCGCTACAAG
ATCCCCTACG GCGCCGTGCT CAGCGTCGGC GACGAGGACC CGGTGGAGGC CGGGCAGGTG
GTGGCCAACT GGGACCCCCA TACCCACCCG ATCGTCACCG AGGTGGACGG CTACGTGCGC
TTCCACGACT TCGTCGAGGG CGTCACGGTC CAGCGCGAGG TCGACGAGGT CACCGGCCTG
TCGAGCCTGG TGGTCACCGA CCCGAAGAGC CGGGGCACCG GCGAGCACAA GCGTCAGGTC
ACCAACGCCA ACGGCAAGGT CACCGAGGAG CGGGTCGCCT ACAAGGACCT GCGGCCGATG
ATCAAGCTGG TCGACGGTGA CGGCAACGAC CTGAACATCG CCGGTACGCA GATCCCGGCC
CACTACTACC TGCCGGCCGG GGCCATCGTC TCGCTCGAGG ACAACGCCGA GGTGCGCGTG
GGTGACGCCC TGGCGCGTAT CCCGCAAGAG GCGTCCAAGA CGCGTGACAT CACCGGTGGT
CTGCCGCGGG TGGCCGACCT GTTCGAGGCG CGTAAGCCGA AGGAGCCGGC GATCCTCGCC
GAGGCCTCCG GCACCGTCGG CTTCGGCAAG GAGACCAAGG GCAAGCAGCG GCTGATCATC
ACCAAGGCCG ACGGCGAGAC CCACGAGGAG CTCATCCCGA AGTGGCGGAA CGTCACCGTC
TTTGAGGGCG AGCACGTGGA GAAGGGCGAG ACCATCGCCG ATGGCGAGCC CAACCCCCAC
GACATCCTGC GGCTGCTCGG CGTGACCAAG CTCGCCGAGT ACATCGTCCA GGAGATCCAG
GACGTCTTCC GCCTCCAGGG TGTGGGCATC AACGACAAGC ACATCGAGGT GATCGTCCGG
CAGATGCTGC GCAAGACCAT CGTCTCCGAT CCGGGCGACT CGCTGCACCT CAAGGGCGAG
CAGGTGGATC GGGCGAAGCT GCTCGAAGAG AACGAGCAAC TCCAGGCGCA GGACAAGCAG
CCGGCGCAGT GGGAGCCGTC GCTGCTGGGC ATCACCAAGG CGTCGCTGTC CACCGAGTCG
TTCATCTCGG CAGCCTCCTT CCAGGAGACC ACCCGGGTGC TGACCGAGGC GGCGACTCGC
GGTATCCGCG ACGACCTGCG TGGCCTCAAG GAGAACGTCA TCGTCGGCCG GCTCATCCCG
GCGGGCACCG GCTTCGCCTA CCACGCAGCC CGTCGCCAGG AGGCACCCGC GCCGGCGGCG
ACGCCGGAGC AGCAGGCCGA GGAGGTCTTC GCCTCCCTCG GCCAAGGCGA GGGCGAGGGC
CCCAGCCCGT CCGATGAGGC GAGCGGGCCC GAGGTCGAGT AG
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| Protein sequence | MPRGPSRRAS GGDLRSTRER AADMRDLLNL FKQPGAQLED FDAIRIGLAS PEMIRSWSYG
EVKKPETINY RTFKPERDGL FCAKIFGPVK DYECLCGKYK RLKHRGVVCE KCGVEVTVAK
VRRERMGHID LASPVAHIWF LKSLPSRIGL LLDMTLRDVE RVLYFEAYIV IEPGMTPLEQ
GQLLTDEQYL EAVEEHGDEF DARMGAEAVL EILKGMDLEA EARRLRDDIE ATGSESKIKR
LSKRLKLLEA FLESGNKPEW LIMTVLPVLP PDLRPLVPLD GGRFATSDLN DLYRRVINRN
NRLKRLLELA APDIIVRNEK RMLQESVDAL LDNGRRGRAI TGTNKRPLKS LADMIKGKQG
RFRQNLLGKR VDYSGRSVIV VGPTLRLHQC GLPKRMALEL FKPFIFSKLQ RRGLATTIKA
AKKMVERETG EVWDILDEVI REHPVLLNRA PTLHRLGIQA FEPVLIEGKA IQLHPLVCTA
YNADFDGDQM AVHVPLSLEA QLESRAMMMS TNNILSPASG EPIIVPSQDV VLGIYYMTRE
RVNARGEGMR LAGVEEVHRA YQTGAAELGA RVEVRIRERV FDDSGEMVER VQRRQTTIGR
ALLFDIVPDG LPFEAVDREL DKKGVSGLVN ACYRRVGLKG TVVFADQLMY TGFFYSTKAG
VSIGVDDMEV PTDKEEALRS AEEEVREIED QYASGLVTSG ERYNKVVDIW AHTNDQVAGA
MMEKMGKETV VDAEGNETEQ KSLNSIFIMA DSGARGSAAQ IRQLAGMRGL MAKPDGSIIE
TPITANFREG LNVLQYFIST HGARKGLADT ALKTANSGYL TRRLVDVSQD LVVTEEDCGT
TDGLVQTPII EGGDVVETLA ERVLGRVVAE DVAVPGSTDI AVEAGTLLDE DWVERLERMG
VDEIKVRSAV TCETRHGVCA KCYGRDLARG HGVNIGEAVG VIAAQSIGEP GTQLTMRTFH
IGGAASRAAA VSQVEVRNTG KARLHNIKTV QHHSGSYVAV SRSGELTVMD EYGRERERYK
IPYGAVLSVG DEDPVEAGQV VANWDPHTHP IVTEVDGYVR FHDFVEGVTV QREVDEVTGL
SSLVVTDPKS RGTGEHKRQV TNANGKVTEE RVAYKDLRPM IKLVDGDGND LNIAGTQIPA
HYYLPAGAIV SLEDNAEVRV GDALARIPQE ASKTRDITGG LPRVADLFEA RKPKEPAILA
EASGTVGFGK ETKGKQRLII TKADGETHEE LIPKWRNVTV FEGEHVEKGE TIADGEPNPH
DILRLLGVTK LAEYIVQEIQ DVFRLQGVGI NDKHIEVIVR QMLRKTIVSD PGDSLHLKGE
QVDRAKLLEE NEQLQAQDKQ PAQWEPSLLG ITKASLSTES FISAASFQET TRVLTEAATR
GIRDDLRGLK ENVIVGRLIP AGTGFAYHAA RRQEAPAPAA TPEQQAEEVF ASLGQGEGEG
PSPSDEASGP EVE
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