Gene Hhal_0807 details

Gene Information

• Locus tag: Hhal_0807
• ID: 4711552
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 888178
• End bp: 889995
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 639855266
• Product: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
• Protein accession: YP_001002385
• Protein GI: 121997598
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02203] lipid A export permease/ATP-binding protein MsbA

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCACCG CCGCTGAAGC CGACCCCTCC CGCACAAGCC CTGCCGGGAA GGGGGCGAAG 
AAGAAAAAGG CCGAGCCAAC GCCCTCTTGG TGGGCGTTTC GGCGGCTCTT TGTCCACTAC 
GCGCTGCCCC ACTGGCCCGC GGGGCTGTTG GCCATTGCCG CGATGCTGGT CTTCGCCGGC 
ACCCAGCTGG GTGTGATCGC CACCATCAAG CCCCTGCTGG ACGACGGCCT GGTGGAGCGG 
GATGTCGCGA CCATACGCAG TTTTGCCTGG CTGCTCTTGG GGCTGCTGGC CGTGCAGGGG 
GTCGCCTACT TCCTGTCCCA CTACTGGGTG ACCTGGATCA GTCGCCAGGT GGTCAAGCGG 
CTCCGGCTCG ACGTCCACGA CCGGCTGCTG AACATGCCCC GGCACGTCTA CGACCACATC 
TCCTCCGGGC AGATGATCTC GCGGCTGACC TACGAGGCGG AGCAAACCGC GAAGACGACG 
ACCAACGCCG TACTGACGAT CTTCAAGGAT GCAGTCACGG TGATCCTGAT CTTCGGCTAC 
ATGATCTACC TCTCCCCTTG GCTGGTGCTG ATCGTAGGCG CGGTCCTGCC CGTCATCGCC 
GGGATCATGG CCTACATCAA CAAGCGCTTT CGCAAGATCA GCAGCCGCGT GCACCAGGCT 
GTCGGCGGGG TCGGCAACGT GGCCGAGGAC ACCGTCCACG CGCATCAGGA GATCAAGCTC 
TTCGGCCAGG CCGAGCAGGC CCAGCAGCGA TTCGAGAAGG TCGCCGAACG CAACCGTCGG 
CAGTTCATGA AGTTCTCGCT GACCAAGTAC GCCAGCGTCC CCTTGATCCG CCTGGTCGTC 
GGTATCGCCC TGGCCGTGAC CATCAGCATC GCCACCGTCG ATGCCGTCGT TGAGACGCTG 
ACCGTCGGGA CGCTCGCCTC TTTTGTCGGT GCGCTGACCC TGCTCAGCAA GCCGACGAAG 
AACCTGGTCA AGCTCAACGC CCAGATGCAG AAAGGCCTGA CCGCCGCGAG CAGCATCTTC 
ACCACCGTCG ACGCCCCGGA AGAGATCGAC ACGGGGACGC GCGCCCTCCA GCGCGCCGCC 
GGGCGGGTCG AGCTGCGCAA CGTCCACTTC TCCTACGACG GTGAGCACCC GGTGCTCCGC 
GGCATCGACT TGACGGCCGA GCCGGGGGCC ATGATCGCCC TGACCGGGCC GTCCGGGAGC 
GGGAAGAGCA CCTTGATCAG CCTCCTGCCG CGCTTCTACG ACGCCACCGA GGGGACAATC 
CTCCTCGACG GTGTCCCGGT GGAGGAATAC CCGCTGGCGG ACTTGCGGCG CCAGTTTGCG 
CCGGTCAGCC AGGACATCAT GCTCTTCAAC ACCACGGTGG CGGAGAACAT CGCCTACGGG 
GCCCAGGGCG AGGTCTCCCG GGCGGAGATC GAGCGCGCCG CGGAGATCGC CTACGCCCGG 
GATTTCATCG AGGCCCTGCC CAACGGCTTC GACACCGAGG TGGGCGAGGA CGGCACGCTG 
CTTTCCGGCG GCCAGCGCCA GCGCATCGCC ATCGCCCGCG CGGTGCTCAA GGACGCCCCG 
ATCCTCCTGC TCGACGAGGC CACCGCCTCG CTGGATACCG AGTCGGAGCG TTACATCCAC 
GCCGCTTTCG AACGACTGAT GCAGGGGCGC ACGGCCTTCG TCATCGCCCA CCGGCTCTCG 
ACGGTGGAGA ACGCCGATCA GATCCTCTTC CTGGAAGACG GACAGGTGGT GGAACGCGGC 
ACCCACAAGG AGCTGCTGGC CCAGAACGGG CGTTACGCGG GGCTTTACCA GATGCAGTTC 
GAGGGCACTG ACGCCTGA 

 

Protein sequence

MSTAAEADPS RTSPAGKGAK KKKAEPTPSW WAFRRLFVHY ALPHWPAGLL AIAAMLVFAG 
TQLGVIATIK PLLDDGLVER DVATIRSFAW LLLGLLAVQG VAYFLSHYWV TWISRQVVKR 
LRLDVHDRLL NMPRHVYDHI SSGQMISRLT YEAEQTAKTT TNAVLTIFKD AVTVILIFGY 
MIYLSPWLVL IVGAVLPVIA GIMAYINKRF RKISSRVHQA VGGVGNVAED TVHAHQEIKL 
FGQAEQAQQR FEKVAERNRR QFMKFSLTKY ASVPLIRLVV GIALAVTISI ATVDAVVETL 
TVGTLASFVG ALTLLSKPTK NLVKLNAQMQ KGLTAASSIF TTVDAPEEID TGTRALQRAA 
GRVELRNVHF SYDGEHPVLR GIDLTAEPGA MIALTGPSGS GKSTLISLLP RFYDATEGTI 
LLDGVPVEEY PLADLRRQFA PVSQDIMLFN TTVAENIAYG AQGEVSRAEI ERAAEIAYAR 
DFIEALPNGF DTEVGEDGTL LSGGQRQRIA IARAVLKDAP ILLLDEATAS LDTESERYIH 
AAFERLMQGR TAFVIAHRLS TVENADQILF LEDGQVVERG THKELLAQNG RYAGLYQMQF 
EGTDA