| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0732 |
|---|
| Symbol | |
|---|
| ID | 4711065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 817708 |
|---|
| End bp | 819075 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639855196 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_001002316 |
|---|
| Protein GI | 121997529 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGCCC CGACCCTCGT CCGTGCCGTT GCGGGACTGC GCAGCGCCCT CAGCGTTCAC
CCCGGCAAGA CCACCCCAGC CCTGCAACCG AGCGCAGCCC CACCGGGCTG GGACCTGACC
CCCGTCGAGG ACTGGTCGGC CATCGAGCGC CTGCTCACCG GCGAGCACCC GCCGGTGGGG
CTGGTGCGGG TGACGGCGGA GAACGTCGAG GCCTGCCAGC GCTTTCTCGC CGGCGGGGCC
GGCGTGGAGT GGCTCGCCCT GTGCGACCCG CCCGACGGGC ACAACCAGGA CGCCGTAGAG
GCCCTGTTGG CCAGCGCCTT CTACGACTTC CACACCCTGC CGGCGGACCC TGAGCGGCTG
GCGGTCTCCC TCGGCCACGC CGCCGGCATG GCGCAGTTGC GCCGGCACAC CCGGTCGCGG
CAGGCCGAAC TCACCGCCGA CACCGGCGGC ATCCTCGGCG ACAGCCCGGG GATCCAGGCC
CTGCGCCGCG ACCTGGCGAA GGTGGCGCGC TGCCCGGCCA CAGTGCTCAT CCACGGTGAG
AGCGGTTCGG GCAAAGAGCT GGCCGCCCAG GCAATCCACC ACGCCTCACC CCGGCGCGAC
GGCCCCTTCG TGGCCGTCAA CTGCGGCGCC ATCCCCGCCA ACCTGGTGCA GACGGAACTC
TTCGGCCACG AGCGCGGCGC CTTCACCGGC GCCCAGCAGC GCCGCTGCGG ACACCTGGAG
CGGGCCCAGG GCGGCACCAT CCTCCTCGAT GAGGTCGGCG AACTGACCCT GGAGCACCAG
GTCAACCTGC TGCGCGTCCT CGAGGACCGG GCGGTGACGC GGGTCGGCGG CACCGAGCGC
ATCCCCGTGG ATGTCCGCGT CATCGCGGCC ACCCACGTGG ACCTGGCGGC CGCCGTCGAG
AGCGGGCATT TCCGCGAGGA CCTCTACTAC CGACTCAATG TGTTGCACAT CGAGCTCCCG
CCCCTGCGCG AGCGGGGCAA CGACATCGAG CGCCTGGCCC ACGTCTTCCT CGAGCGCTTC
CGCAGCGCCT ACCTCAGCCC GGTGCGCGGC TTCACCAGCC AGGCCCTGGG GGCACTGCGC
CGCCACAGCT GGCCGGGGAA CGTGCGCGAA CTGATCAACC GCATCCAACG CGCCGTGGCC
ATGGGCCAGC GCGCGCTGCT CAGCCCCGGC GATCTGGGGC TGGAGGCCCG GCTGGGCACC
GTCCGCCAGG CCGAGACCCT GGACGACGCC CGGGCCCGGG CCGAGCGGGC GGCCATCCTT
GGCGCCCTGG CGCGCTGCGA GCGCAACGTC TCCCGGGCCG CCCGCGAGCT GGACATCTCG
CGGGTGACGC TCTATCGCAT CATGCACCGC CTGGGGCTGA GGCCGTGA
|
|---|
| Protein sequence | MGAPTLVRAV AGLRSALSVH PGKTTPALQP SAAPPGWDLT PVEDWSAIER LLTGEHPPVG
LVRVTAENVE ACQRFLAGGA GVEWLALCDP PDGHNQDAVE ALLASAFYDF HTLPADPERL
AVSLGHAAGM AQLRRHTRSR QAELTADTGG ILGDSPGIQA LRRDLAKVAR CPATVLIHGE
SGSGKELAAQ AIHHASPRRD GPFVAVNCGA IPANLVQTEL FGHERGAFTG AQQRRCGHLE
RAQGGTILLD EVGELTLEHQ VNLLRVLEDR AVTRVGGTER IPVDVRVIAA THVDLAAAVE
SGHFREDLYY RLNVLHIELP PLRERGNDIE RLAHVFLERF RSAYLSPVRG FTSQALGALR
RHSWPGNVRE LINRIQRAVA MGQRALLSPG DLGLEARLGT VRQAETLDDA RARAERAAIL
GALARCERNV SRAARELDIS RVTLYRIMHR LGLRP
|
|---|
| |