Gene Hhal_0700 details

Gene Information

• Locus tag: Hhal_0700
• ID: 4710752
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 783214
• End bp: 785154
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 639855163
• Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
• Protein accession: YP_001002284
• Protein GI: 121997497
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.522723
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCACGG AGCTCGAGGT CTTCATCCGT CGGCGCGCCA ATGAGCAGGG GCTCTCCCTG 
GCCGAGGTGG CGCGGCGGGC CGGGATGAGC CGGCAGTCGC TCTACGATTG CTGGTCGCGG 
GATGGCTACC CGAACCTGGC CACCATCGTC GAGCTGGCCG AGGTCCTCGG GGTGCACCCG 
CTGCGGCTCC TGGAGCTGCA GTTCCCCGAC GACGGCGCGG CCGAGGATCA CTGCCACACC 
CTGCGTTGGA ACCTGGACCG GGCCGAGCTG GCCACGACGC TGCTTGAGCA CACGCCCCAG 
GCCGTTATCG GCCTGGACGC CGATGGGCAG GTCGCGCTGT TGAACCCGGC CGCCGCCGAG 
CAGCTGCAGC GCCCCCCGGA GCGAGTGCTC GGCCAGCCGG CCGAGCGCAT CCTGCCCGGC 
GAGGCGCTGG GGCGCATCCG CGCGCAGTGC CCGGTGATGA GCGGCGCACC GACTCAGCCG 
CACGCCACGC CCCGCGGCAG CCTGCGGCTG AGCACCCGTC GCGGCGAGGA CGGCAGCCTG 
CTGCAGACGC GCGCGCAGTT GGTCGAGGCG CCGCTCTACG AGCGTAATGT GGTCCTGCTG 
CTCCTCGACC CCGGGGATCC CGCCAACGGG ACGGCGGCCG AGGCACCGCC CCCCGCCTTC 
GACCGCGAGC CGCTCACCGG CCTCCCCGAC CGAGAGTCGA CCGAGGCGCT TCTGCGCTGG 
GCGATGCAGC GCACCGAGTC GCGGGGCAGC GAGCTGGCGG TGCTGGTCAT CGAGCTCGAC 
GGCTTCGACC GGACCGAAGC CGGGCTCGGC CCGGAGATCG CCGACCGGGT GCTGCACACC 
GCAGCCCAGC GGGTCGGCGG TCAGCTGCGC CACGCCGATC TCCTCGGCCA CCTGCAACGG 
GGCCAGTTCA CCGCCATCCT GCCGGATACC GGCTCGCGCA GCGGCGCCCT GCAGGTGGCC 
CAGCGCATCT GCCAGAGCCT GGAGCATCCG GTGGAGACCG GCTCCTGCGC CTGTCAGTTG 
CAGCCGCGTA TCGGCATTGC GCTGTTCCCC GAGCACAGCC ACCACGCCGT CACCCTCCTC 
GAACAGGCCC GCTCGGCCGC CACCCGCACG GCGGGAGACC ACCAACCGGG GCAGATCGTG 
GAGCCGGACC TGGGCGACCG GGTGGCCCGG CGCGTGGCGC TGATCCGCGA CCTGCGCCGG 
GCCCTAGAGC GGCGCAGCCT GTGCGTGCAC TACCAGCCGG TCTTCGATCT GGCCAGCGGC 
GAGCTGACCG CCCTGGAGGC GCTGCTGCGC TGGCCCGAAG GCGACACCTC CCAGCCGTCC 
ATCGGCGAGG TCATCGACGC CGCCGAGCAG GCCGGGCTGC TCGGTGAGCT GGACCGCTGG 
GTGGTCGAGC AGGTGTTGTC GGACCTCGCC CACTGGCAAT CCCAGGGCTG CTGCGTGCCG 
CGGGTGAGCG TCAACGCCTC GGGGCGCACC CTGGGCACCG GGGCCCTGGA GCCGGCGGTG 
CTCAGCAAGC GCCTGGAGCG CCTCGGACTA CCGCCGGGCA CACTGGACAT CGAGCTCTCC 
GAGCGCCACC TGCTCGACAC CGGCGGCGCC GGCCACGACG GCCTGACCCA TATCCGCGAG 
CACACCCTCG GGGTCACCAT CGACCACTTC GGCACCGGCT ACGCCTCGCT GATCTCCCTG 
CGCGACCTGC CGGCGGGACG ACTCAAGGTG GACCAGACCC TGATCCGCGA CCTGCCCACG 
GACCCGGATC AGCAGGCCCT GGTGGCCAGC ATCGCCCGCC TGGGCGAACG CTTCGGCCTG 
GAGCTGGCCG CCGAGGGGGT GGAGACCCGG CAGGAGGCGG AACACCTTCG CCAGCTGGGC 
TTCACCGAGG CGCAGGGCTA CCACTTCGGC TACCCGGCCC CGGCGGCGGC GGTGTCCGAG 
CACCTGGCGA CCGCGCCCTA G 

 

Protein sequence

MSTELEVFIR RRANEQGLSL AEVARRAGMS RQSLYDCWSR DGYPNLATIV ELAEVLGVHP 
LRLLELQFPD DGAAEDHCHT LRWNLDRAEL ATTLLEHTPQ AVIGLDADGQ VALLNPAAAE 
QLQRPPERVL GQPAERILPG EALGRIRAQC PVMSGAPTQP HATPRGSLRL STRRGEDGSL 
LQTRAQLVEA PLYERNVVLL LLDPGDPANG TAAEAPPPAF DREPLTGLPD RESTEALLRW 
AMQRTESRGS ELAVLVIELD GFDRTEAGLG PEIADRVLHT AAQRVGGQLR HADLLGHLQR 
GQFTAILPDT GSRSGALQVA QRICQSLEHP VETGSCACQL QPRIGIALFP EHSHHAVTLL 
EQARSAATRT AGDHQPGQIV EPDLGDRVAR RVALIRDLRR ALERRSLCVH YQPVFDLASG 
ELTALEALLR WPEGDTSQPS IGEVIDAAEQ AGLLGELDRW VVEQVLSDLA HWQSQGCCVP 
RVSVNASGRT LGTGALEPAV LSKRLERLGL PPGTLDIELS ERHLLDTGGA GHDGLTHIRE 
HTLGVTIDHF GTGYASLISL RDLPAGRLKV DQTLIRDLPT DPDQQALVAS IARLGERFGL 
ELAAEGVETR QEAEHLRQLG FTEAQGYHFG YPAPAAAVSE HLATAP