| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0684 |
|---|
| Symbol | valS |
|---|
| ID | 4710313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 766491 |
|---|
| End bp | 769244 |
|---|
| Gene Length | 2754 bp |
|---|
| Protein Length | 917 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639855147 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_001002268 |
|---|
| Protein GI | 121997481 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.980667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAGA CGTACGACCC GAGCGCAATC GAGTCCCGAC TCTACGAGCT CTGGGAGCAG
GGCGGCCACT TCGCCCCCTC CGGCGAGGGC AGCCCGTACT GCATCATGAT CCCGCCGCCG
AACGTCACCG GCACCCTGCA CATGGGGCAC GCCTTCCAGG ACACGGTGAT GGACGCCCTG
GTGCGCTACC ACCGCATGGA CGGCCACAAC ACCCTCTGGC AGCCGGGCAC CGACCACGCC
GGGATCGCCA CGCAGATGGT CGTCGAGCGC CAGCTCGAGG CCGAGGGGCT GAGCCGCCAC
GACCTGGGCC GCGAGCGCTT CCTGGAGCGA GTCTGGCAGT GGAAGGCCGA ATCCGGCGGC
ACCATCCAGA ACCAGCTGCG GCGCATGGGC GCCTCGGTGG ACTGGCGCCG CGAGCGCTTC
ACCATGGACG AGGGCCTCTC CGAGGCGGTT ACCGAGGTCT TCGTACGCCT CTACGAGGAG
GATCTGCTCT ACCGCGGCGA GCGCCTGGTC AACTGGGATC CGGTGCTGCA CACCGCCGTC
TCGGACCTGG AGGTGGTCTC CGCCGAGGAG CAGGGCCACA TCTGGCACAT GGTCTACCCG
CTGGCCGACG GCAGCGGCTC GGTGGTGGTG GCCACCACCC GGCCGGAGAC CATGCTCGGC
GACACCGCCG TGGCCGTTAA CCCGGAGGAC GAGCGCTACA CCCATCTGAT CGGCAAGAGC
GTGCGCCTGC CCCTGGTCGG CCGCGAGATC CCGATCATCG GCGACGACTA CGTCGACCCG
AGCTTCGGCA GCGGCTGCCT GAAGATCACC CCGGCCCACG ACTTCAACGA CTTCGCCGTC
GGCGAGCGCC ACGACCTGCC GCGGATCAAC GTCCTCACCG AGGACGCCCG CATCAACACC
AACGCCCCGG AGCGCTACCA GGGGCTGGAC CGCTACGAGG CCCGCAAGCA GATCGTCGAG
GACCTGCGCA CCGAGGGCCT TCTGCAGCAG GTCGAGGACC ACAAACTGAT GGTCCCGCGC
GGCGACCGCA GCGGCGCCGT CATTGAGCCG TACCTGACCT GGCAGTGGTT CGTGCGCGCC
GAGCCGCTGG CCCGCCCGGC CATCGAGGCC GTCGAGGACG GGCGCATCCG CTTCATCCCC
GGCAACTGGG ACAAGACCTA CTACGAGTGG CTGCGCAACA TCGAGGACTG GTGCATCTCG
CGGCAGATCT GGTGGGGCCA CCGCATCCCG GCCTGGTACG ACGAGCAGGG CCACGTCTAC
GTGGGCCGCT CCGAGGCCGA GGTCCGCGAG CGCCACGGCC TGGGCGACGC GCCGCTGACC
CGCGACGACG ATGTCCTCGA CACCTGGTTC TCGTCGGCCC TGTGGCCCTT CTCCACCCTG
GGCTGGCCCG AGCAGACCGA TGCCCTGCGC ACCTTCTACC CGACCTCGGT GCTGGTCACC
GGCTTCGACA TCATCTTCTT CTGGGTCGCC CGGATGATCA TGTTCGGGCT GCACTTCATG
GGCGAGGTAC CGTTCCGCGA GATCTACATC CACGGCCTGG TGCGCGACCC CGAAGGGCAG
AAGATGTCCA AATCCAAGGG CAACGTCCTC GACCCGCTGG ACATCGTCGA CGGCATCGAT
CTGGAATCCC TCGTCACCAA ACGCACCGCC GATATGATGC AGCCGCAGCT GGCTGAGCGC
ATCGAGGCCA TGACCCGCCG CCACTACCCG GACGGCATCA AGGCCCACGG CACCGACGCC
CTGCGCTTTA CCTTCGCCTC GCTGGCGACC ACCGGGCGGG ACGTGGTCTT CGACCTCGGC
CGGGTCGAGG GCTACCGCAA CTTCTGCAAC AAGCTCTGGA ACGCCGCCCG CTACGTGCTG
ATGAACACCG AGGGCGCCGA CTGCGGCAGC GGCGGGCCGG TGGAGCTGGG CGCCGCCGAG
CGCTGGATCC GCTCGCGACT GGATCGCACC GTCGCCGAGG TCCGCCAGGC CTTCGCCGAC
TACCGCCTGG ACCAGGCGGC GCAGGCCATC TACGAGTTCA CCTGGGACGA GTACTGCGAC
TGGTACCTGG AGCTCTCCAA GCCGGCCCTG CGCGAGGGCA CCGCGGCCCA GGCCCGCGGC
ACCCGGCAGA CGCTGATCCA GGTCCTCGAG GAGCTGCTGC GCCTGACCCA CCCGCTGATG
CCGTTCATCA CCGAGGCGAT CTGGCAGCGC GTCGCCCCGG TCGCCGGTGC CCAGGGCGAG
ACGATCATGC GCCAGCCCTT CCCGGCGGCG GATGCGCAGC GGCGCGACGC CACCGCCGAG
GCCGAGATCG ACTGGGTCCA GCGGGTCATC CTCGGCGTGC GGCGCATCCG CGGCGAGATG
GACATCTCGC CGAGCCAGCC GGTGCCGGTG CTGCTGCGCC ACGCCGGCGA ACAGGACCGG
GCGCGACTCG CCGAGCACCA GGGCTTCGTC ACCACCCTCG CCCGGCTGGA GTCGATCCGG
GTGCTGGAGG CCGACGAGCA GCCGCCGGAG TCGGCCCTCG CCCTGGCCGG CGAGATGGAG
GTCCTGGTGC CCATGGCCGG CCTGGTCGAC AAGGAGGCCG AGCTCGCCCG CCTGGCCAAG
GAGCGGACGC GGCTCGAGGG CGAGATCGAG CGCGCCGAGA AGAAACTCGG CAACGAGAGC
TTCGTCGCCA AGGCCCCGGC CGAGGTGGTG GACAAGGAGC GCGCGAAGCT CAACGAGGCG
CAGCAGGCCC TGGAGAAGGT CGCCGAACAA GAGCGGCGGG TGGAGGCGCT CTAA
|
|---|
| Protein sequence | MEKTYDPSAI ESRLYELWEQ GGHFAPSGEG SPYCIMIPPP NVTGTLHMGH AFQDTVMDAL
VRYHRMDGHN TLWQPGTDHA GIATQMVVER QLEAEGLSRH DLGRERFLER VWQWKAESGG
TIQNQLRRMG ASVDWRRERF TMDEGLSEAV TEVFVRLYEE DLLYRGERLV NWDPVLHTAV
SDLEVVSAEE QGHIWHMVYP LADGSGSVVV ATTRPETMLG DTAVAVNPED ERYTHLIGKS
VRLPLVGREI PIIGDDYVDP SFGSGCLKIT PAHDFNDFAV GERHDLPRIN VLTEDARINT
NAPERYQGLD RYEARKQIVE DLRTEGLLQQ VEDHKLMVPR GDRSGAVIEP YLTWQWFVRA
EPLARPAIEA VEDGRIRFIP GNWDKTYYEW LRNIEDWCIS RQIWWGHRIP AWYDEQGHVY
VGRSEAEVRE RHGLGDAPLT RDDDVLDTWF SSALWPFSTL GWPEQTDALR TFYPTSVLVT
GFDIIFFWVA RMIMFGLHFM GEVPFREIYI HGLVRDPEGQ KMSKSKGNVL DPLDIVDGID
LESLVTKRTA DMMQPQLAER IEAMTRRHYP DGIKAHGTDA LRFTFASLAT TGRDVVFDLG
RVEGYRNFCN KLWNAARYVL MNTEGADCGS GGPVELGAAE RWIRSRLDRT VAEVRQAFAD
YRLDQAAQAI YEFTWDEYCD WYLELSKPAL REGTAAQARG TRQTLIQVLE ELLRLTHPLM
PFITEAIWQR VAPVAGAQGE TIMRQPFPAA DAQRRDATAE AEIDWVQRVI LGVRRIRGEM
DISPSQPVPV LLRHAGEQDR ARLAEHQGFV TTLARLESIR VLEADEQPPE SALALAGEME
VLVPMAGLVD KEAELARLAK ERTRLEGEIE RAEKKLGNES FVAKAPAEVV DKERAKLNEA
QQALEKVAEQ ERRVEAL
|
|---|
| |