| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0616 |
|---|
| Symbol | |
|---|
| ID | 4711548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 694911 |
|---|
| End bp | 695609 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639855080 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_001002203 |
|---|
| Protein GI | 121997416 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.243414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATCGGG CCTATTACAG CACTGCCACG CTTTGCGGGG TACTGGGCGT CTCCCCCAGC
GGTTTCTACG CGTGGCGCAA TCGCGGCCGC TCAGTCCGTG CGGCGACAGA CGCCGCTCTG
ACGGAGCGGA TCGAGGCGAT CCACGACAAT TCTCGCGGCA CATACGGTGC ACCGCGGATT
CATGCCGAGC TCCGGGATGA AGGCTGGCGC TTCTCCGCAA AGCGAGTCGC CCGCCTGATG
CGGGCCGCTG GCCTGCAAGG CGTCAGCCGC CGCAAGGGAA CGATTGCGAC GATTCCGGAC
CGGGACAGCG AAGACAAGCC GGATCTCGTC GAGCGGGACT TCACCGCAAA TGGGCCAGAC
CAGCTCTATG TCGCGGATAT CACGTACGTT CCAACGTGGG CGGGATTCCT GTACCTCGCT
GTCGTCATCG ACGTGTTCTC ACGGCGTGTC GTGGGCTGGT CAATGGCTGG CCACATGCGC
ACGGAGATCG TCCTCGACGC CCTCGAGATG GCGATCTGGC AGCGCCGTCC AGAGGCCGTC
ATACACCACT CGGACCGTGG GTCGCAGTAC ACATCCATTG CCTTCGGCAA CCGCTGCCGG
GAGGCCGGGG TGCGCCCTTC GATGAGTTCG GTGGGCGACT GTTACGACAA CTCGATGGCC
GAGAGTGGTC TTGCCCACCA ACCGTGGACA CCTCAATAG
|
|---|
| Protein sequence | MNRAYYSTAT LCGVLGVSPS GFYAWRNRGR SVRAATDAAL TERIEAIHDN SRGTYGAPRI
HAELRDEGWR FSAKRVARLM RAAGLQGVSR RKGTIATIPD RDSEDKPDLV ERDFTANGPD
QLYVADITYV PTWAGFLYLA VVIDVFSRRV VGWSMAGHMR TEIVLDALEM AIWQRRPEAV
IHHSDRGSQY TSIAFGNRCR EAGVRPSMSS VGDCYDNSMA ESGLAHQPWT PQ
|
|---|
| |