| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0542 |
|---|
| Symbol | |
|---|
| ID | 4709620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 610723 |
|---|
| End bp | 612753 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639854999 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_001002130 |
|---|
| Protein GI | 121997343 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.291443 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGC GGTTCAAGCT GAACGCCCGT TTCCAGCCCG CTGGGGATCA GCCCCAGGCG
ATCGACGAGC TCGTCGACGG GATCGAGTCG GGGCTCTCGG ACCAGACCCT GCTTGGGGTG
ACCGGTTCGG GCAAGACCTT CACCGTCGCC AACGTGATCG AGCGGCTGCA GCGTCCGGCG
ATCCTGCTGG CGCCGAACAA GACCCTGGCC GCGCAGCTCT ACGGCGAGAT GCGCGAGTTC
TTGCCGGAGA ACCGCGTCGA GTACTTCGTC TCCTACTACG ACTACTACCA GCCCGAGGCG
TACGTGCCCT CCTCGGATAC CTTCATTGAG AAGGACGCCT CGGTGAACGA GCACATCGAG
CAGATGCGCC TGTCCGCCAC CAAGGCGGTG CTCGAGCACA AGGATACGGT CATCGTCGCC
TCGGTCTCCT CCATCTACGG GCTGGGCGAC CCGCAGGCGT ATATGTCGAT GCTCCTGCAC
CTGGTGCGCG GTGAGCAGAT CGACCAGCGG GCGATCCTGC GCCGGCTGGC CGAACTGCAG
TACACCCGCA ACGACACCGA GCTGACCCGG GGCACCTACC GCGCCAGGGG CGAGGTGATC
GACATCTTCC CCGCCGAGTC CCCCGAAGAG GCGGTCCGGG TGCAGCTCTT CGACGACGAG
ATCGAGGAGA TCAGCTGGTT CGATCCGCTC ACCGGCGAGG TGCTGCGCCG GGTGCCGCGT
GTGACCATCT ACCCCAAGAC CCACTACGTC ACCCCGAAGG AGCAGATCCA CCAGGCCGTG
GAGCAGATCA AGGAGGAGCT GCGCGAGCGC CTGGATGAGC TGCGGGCTGC CGACAAGCTG
GTGGAGGCGC AGCGGCTGGA AGAGCGGACC CGCTTCGATA TGGAGATGAT GCTCGAGCTC
GGCTACTGCA ACGGCATCGA GAACTACTCC CGCTATCTCT CCGGCCGCGG GCCGGGAGAG
CCGCCGCCGA CTCTGTTCGA CTACATCCCG CCGGAGGCCG TGCTGTTCAT CGATGAGTCC
CACGTCACCG TTCCGCAGAT CGGCGGCATG TACAAGGGCG ACCGCTCGCG CAAGCAGACC
CTGGTCGAAT ACGGGTTCCG GCTGCCCTCG GCGCTGGACA ACCGGCCGCT GAAGTTCGAG
GAGTTCCGCC GCCTGGCGCC GCAGACGGTC TACGTCTCGG CCACGCCGGG CCCCTTCGAA
GAGGAGCACG CCGGGCAGGT GGTGGAGCAG GTGGTCCGCC CCACCGGGCT AGTGGACCCG
GAGGTGGAGG TGCGTCCGGC TACTGCCCAG GTCGACGATG TCTACGGCGA GATCCGCGCG
CGCGCCGAGC GGGACGAGCG GGTGTTGGTC ACCACGCTGA CCAAGCGTAT GGCCGAGGAC
CTGACCGAAT ACCTGGAGGA GAACGGCGTC CGGGTCCGCT ACCTCCACTC CGACGTGGAC
ACGGTCGAGC GCACCGAGAT CATTCGTGAC CTGCGCCTGG GCCACTTCGA TGTGCTGGTC
GGCATCAACC TCCTGCGCGA GGGGCTGGAC ATCCCCGAGG TCTCGCTGGT GGCTATCCTC
GATGCCGATA AGGAGGGCTT TCTGCGTTCT ACCCGCTCGC TGATCCAGAC CATCGGTCGG
GCCGCCCGCA ATATCGATGG ACGGGCGATC CTCTACGCTG ATCAGATGAC GGACTCCATG
CGCCGCGCCA TCGACGAGAC GGAGCGGCGG CGGGCCAAGC AGATCGCCCA CAATGAGGCC
CACGGCATCA CCCCGCAGGG GATCCGCAAG GAGGTGCCCG ACATCATGGA GCGCGGTGGT
GTGCCGGCGC CGGGGGCCCC GCAGCGGGCG GCCCGGGTGG CCGAAGAGGC GGGCGAGTAC
GCCGGGCTGT CCCCCGCCGA GGCGGTGCGG CGGATCCGCG AGCTAGAGAA GCGTATGCAG
GAGCACGCCC GGGAGCTGGA GTTCGAGGAG GCGGCCCGGG TGCGCGACGA GATCCGCCGC
ATCGAGCAGC ACGCCCTGGG CGGAGGCGGC GCCGCGGCTG CCGCGTCCTG A
|
|---|
| Protein sequence | MTERFKLNAR FQPAGDQPQA IDELVDGIES GLSDQTLLGV TGSGKTFTVA NVIERLQRPA
ILLAPNKTLA AQLYGEMREF LPENRVEYFV SYYDYYQPEA YVPSSDTFIE KDASVNEHIE
QMRLSATKAV LEHKDTVIVA SVSSIYGLGD PQAYMSMLLH LVRGEQIDQR AILRRLAELQ
YTRNDTELTR GTYRARGEVI DIFPAESPEE AVRVQLFDDE IEEISWFDPL TGEVLRRVPR
VTIYPKTHYV TPKEQIHQAV EQIKEELRER LDELRAADKL VEAQRLEERT RFDMEMMLEL
GYCNGIENYS RYLSGRGPGE PPPTLFDYIP PEAVLFIDES HVTVPQIGGM YKGDRSRKQT
LVEYGFRLPS ALDNRPLKFE EFRRLAPQTV YVSATPGPFE EEHAGQVVEQ VVRPTGLVDP
EVEVRPATAQ VDDVYGEIRA RAERDERVLV TTLTKRMAED LTEYLEENGV RVRYLHSDVD
TVERTEIIRD LRLGHFDVLV GINLLREGLD IPEVSLVAIL DADKEGFLRS TRSLIQTIGR
AARNIDGRAI LYADQMTDSM RRAIDETERR RAKQIAHNEA HGITPQGIRK EVPDIMERGG
VPAPGAPQRA ARVAEEAGEY AGLSPAEAVR RIRELEKRMQ EHARELEFEE AARVRDEIRR
IEQHALGGGG AAAAAS
|
|---|
| |