Gene Hhal_0532 details

Gene Information

• Locus tag: Hhal_0532
• ID: 4709697
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 599383
• End bp: 601332
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 639854989
• Product: helicase c2
• Protein accession: YP_001002120
• Protein GI: 121997333
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1199] Rad3-related DNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGATTCTA GCCCGGCTAC CGGGGCCTTC GCCGAGGCGG TGGTCTCCGA GCTCGACGTC 
GGCGGGGCGG TCAGCCGGGC CATCGAGGGC TTCGCCCCGC GCCCGGGGCA GCTACGCCTG 
GGGGCGGCGG TGGCCGACGC CCTGGCCGAT GACGAGGTCC TGGTGGCGGA GGCCGGCACG 
GGCATTGGCA AGACCTACGC CTACCTGGTG CCCACGCTGC TCGACGGGCG CCGGGTCATC 
ATCTCCACCG GGACGCGCAC CCTGCAGGAT CAGCTCTACC ACCGCGATCT CCCGCGGGTG 
CGGGCGGCGC TGCAGGCTGC CACGCCCCGC CCGATGCGTG CGGCGCTGCT CAAGGGGCGG 
GCCAACTACC TGTGCCGCTA TCGGCTGCAG CGGGCGGTGG AGGAGGGGCC GTTCACGGCC 
CCTGATGAAG TTGAGCAGAT CGAGACGGCC GCGCAGTGGG CCCGGCAGAC GGAAAGCGGC 
GATCTGGCCG AGGCGCCGGA GGGCGTCGAG GGCGTGGCCG AACGCATCAC CTCCACCCCG 
GAACGCTGCC TCGGTCAGGG GTGTCCGGCC TACGACGAGT GCTTCTTCTA CGAGGCCCGC 
CGGCGCGCCC ACGAGGCCGA CGTGCTGGTG GTCAACCACC ACCTGTTGCT GGCCGACTGG 
GCGGTCAAGG ACGCCGGTTA CGGCGCCGTG CTGCCCGAGG CGCAGGCGGT GGTCCTCGAT 
GAGGCCCATC TCCTTCCGGA CACCGCCGCA CGCTTCTTCG GCCACTCGGT CTCGGCGCGG 
GCCCTGCGCG ATCTGGTGCG GGACGTGCGC ATCGCCGATC GGCGCGAGGC CGGTGACATG 
CCGGACCTGC GCGCGGCCGT GGATACGCTG GAGAGCGCGG TCGCCGAGCT GCGCCTGGCC 
CTGGAGGGCG GGGAGCAGCG GGATGCCTGG TACGTGGTGG CCGAGCAGGG GGCCGCCGAG 
GCGGCCGCGG CCCTGCGCGG CGCGACCGCC GGCCTGGAGC GGGTCCTCGC CGCGGCGGCC 
GAGCGCGGCC CCGAGCTGGA GGCGTGCCAC CGGCGCGCCG GTGAGCTGGG CGAGGCGCTC 
GGGCGCTTCC TGGCTCCGGA GGCGGAGGGC GAGGTGCAGT GGTACGAGAC CCGCGGGCGG 
GGCTTCGCCC TGCACCTGAC GCCGCTGGAT GTGGGCGGCA GCTTCCGCCG GCGCATGGAG 
CGCGAGGCCA GCGCCTGGGT CCTGCTCTCG GCCACCCTCG CCGTGGGCAG CTCCTTCGCC 
GCCTTTCGCC GCCGCCTGGG GCTGGCCGAG TCGGTGCGCA CCGAGCAGCT GGCCAGTCCC 
TTCGACTACG CCCGCCAATC CCTGCTGTAC TGCCCCAGCG GTCTCCCGCT GCCCAATCAG 
GCGGGGTACG ATCAGGCAGT GGTGGCCCGG GCGCAGGAGG TGATCGACTG TACGCCTGGC 
GGGGTCTTCC TGCTGTTCAC CAGTCATCGG GCCCTGCGGC TGGCCCGTGA GCAGCTGGAG 
ACGAGCCTGA CGCGCCCTCT GCTGGTTCAG GGTGATGCCC CCCAGGGGCG GCTGCTGGAC 
GCCTTTTCGC GGGCGGGTGA TGCCGTCCTG CTCGGTACGG CGAGCTTCTG GCAGGGGGTA 
GACATCCGCG GGGCGGCGCT CTCGGCGGTG ATCATCGACC GCCTGCCCTT CGCCGCTCCC 
GGGGACCCGG TCACCGCCGC GCGTCAGCGC GCAGTGGAGG AGGCCGGGGG CGTGGCGTTT 
CGGGATATCC TCCTGCCCGA GGCGGTCATC GCCCTGAAGC AGGGGGCCGG GCGCCTGATC 
CGCGACGATG CCGACCGCGG CGTGCTGATG ATTGCGGATC CGCGCCTGCT CGGTAAGCCG 
TACGGCAGGC TGTTCCGGAG CAGCCTGCCG GAGATGCCGC TCACCCGCCG TGTTGAGGAT 
GTACAAGCCT TCTGGGAGGA CGAGTCGTGA 

 

Protein sequence

MDSSPATGAF AEAVVSELDV GGAVSRAIEG FAPRPGQLRL GAAVADALAD DEVLVAEAGT 
GIGKTYAYLV PTLLDGRRVI ISTGTRTLQD QLYHRDLPRV RAALQAATPR PMRAALLKGR 
ANYLCRYRLQ RAVEEGPFTA PDEVEQIETA AQWARQTESG DLAEAPEGVE GVAERITSTP 
ERCLGQGCPA YDECFFYEAR RRAHEADVLV VNHHLLLADW AVKDAGYGAV LPEAQAVVLD 
EAHLLPDTAA RFFGHSVSAR ALRDLVRDVR IADRREAGDM PDLRAAVDTL ESAVAELRLA 
LEGGEQRDAW YVVAEQGAAE AAAALRGATA GLERVLAAAA ERGPELEACH RRAGELGEAL 
GRFLAPEAEG EVQWYETRGR GFALHLTPLD VGGSFRRRME REASAWVLLS ATLAVGSSFA 
AFRRRLGLAE SVRTEQLASP FDYARQSLLY CPSGLPLPNQ AGYDQAVVAR AQEVIDCTPG 
GVFLLFTSHR ALRLAREQLE TSLTRPLLVQ GDAPQGRLLD AFSRAGDAVL LGTASFWQGV 
DIRGAALSAV IIDRLPFAAP GDPVTAARQR AVEEAGGVAF RDILLPEAVI ALKQGAGRLI 
RDDADRGVLM IADPRLLGKP YGRLFRSSLP EMPLTRRVED VQAFWEDES