| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0477 |
|---|
| Symbol | |
|---|
| ID | 4711534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 545656 |
|---|
| End bp | 546399 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639854936 |
|---|
| Product | FliA/WhiG family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001002067 |
|---|
| Protein GI | 121997280 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.965458 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGTC ACGCGATGTA CACCGCGGTG GCGCAACAGG GCGACGAGGA CCTCGTCACC
CGCCACGCCT CCCTGGTCAA GCGGATCGCC CACCACCTGG CCAGCCGCCT GCCGCCGAGC
GTGCAGCTCG AGGATCTGAT CCAGGCCGGC ATGATCGGCC TGCTCGAGGC GGCGCGCCAG
TACGACTCCT CCCAGGGCGC GAGCTTCCAG ACCTACGCCG GGATCCGCAT CCGCGGCGCC
ATGCTCGATG AGATGCGCCG GCTTGACTGG ACGCCGCGAT CGGTCCACCG CAAGGGCCGC
GAGGTGGCCG AGGCGATCCG CACCATCGAG CACCAGACCG GGCGGGACGC TCGCGACCAC
GAAGTGGCCG AGGCCCTGGG GATCTCGGTG GCGGAATACC ACAATATCCT GCAGGATGTG
TCCTCGGCGA AAGTCTTCAG CATCGATCAG GAGGATCCGG GCACCGGCGA ACCCCACGAG
CCCGCCGGGC ACGAGCCGGG GCCGCTGGCG ATGCTGCAGG ACGAGGCGTT TCAGGGTGAA
CTGGCCGAGG CGATCCGCGA GCTGCCTGAG CGCGAGCGTC TGGTCATGGC GCTCTATTAC
GATGAGGAGC TCAACCTGCG CGAAATCGGT GAGGTCCTCG GGGTCTCGGA GTCGCGGGTC
AGCCAGATCC ACGGCCGGAT CATGCTCAAG CTGCGCAATC GCCTCGGCGA GTGGCGGCGC
GAGCAGCAGG AACGAACGGC TTAG
|
|---|
| Protein sequence | MNGHAMYTAV AQQGDEDLVT RHASLVKRIA HHLASRLPPS VQLEDLIQAG MIGLLEAARQ
YDSSQGASFQ TYAGIRIRGA MLDEMRRLDW TPRSVHRKGR EVAEAIRTIE HQTGRDARDH
EVAEALGISV AEYHNILQDV SSAKVFSIDQ EDPGTGEPHE PAGHEPGPLA MLQDEAFQGE
LAEAIRELPE RERLVMALYY DEELNLREIG EVLGVSESRV SQIHGRIMLK LRNRLGEWRR
EQQERTA
|
|---|
| |