| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0359 |
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| Symbol | |
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| ID | 4711319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 416152 |
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| End bp | 418323 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639854822 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001001955 |
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| Protein GI | 121997168 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0524012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATC GATCCACCAC CGCGGATTCA ACGATCGAAG CCCAGGGCGA AACGGAGATT
CCCCTCGGCG CCAACGAGCG CGCCCTAACC GGCTGGCAGA AGCAGCTGTT CTTCTGGGCG
TGTGCGCTCT ACACGGCATT CCATATCTTC ACCCTGAACG TCGCCCCGCT GGAGACCTGG
ACCTTCCGGA TCCTGCACAT CGCCGGCGGC CTGTTCATCG GCTTCGCGCT GACCTCCGCG
CGGACCCTGG ACCGCAACGC CCCGGCGGCA CCGATGGGCG TCCTTCAGTG GCTGATTCTG
CTCGCCTCCA CGGCCCTGAT GCTCTGGGCC CTGGGCGCCC TCGCCTACGT CGGCTACCTG
CTGGAGGTGG ACGGGATCTC CTCCACGCAG CTGCCGCCGT GGCTGGCCAA GCAGTTCGGC
TACACCCTGT TCGCCAGCGT GGCCGTCGCC ACCCTGGCCG GCTGGTTCCT GCGCAGCCCG
GACAACCGCG TCCACTGGCC GGACTGGATC CTCGGCTTCG GCGCGCTGAT GGTCGGCGCC
TACATCGTCA TGGCGCTGGG CCGCTGGCAG ATGGCCGCCG GGACCCCCTT CGCCGGGGAG
CAGGAGCTGT GGATCTCGGC GGCCGGCGTG CTGCTGATCC TGGAGCTGAC CCGACGGATC
GCCGGCCTGG CGCTGGTGAT CATCACCGGC GTCTTCCTGG TTTACTCCTT CGTCGGGCCG
TGGCTGCCCG GCTTCCTGGA GCACCGCGGC TACTCGTTCA CGCGCTTCTT CACCTACCTC
TACACCGATA GCGGGATCCT CGGGCCAACC ACTGCGGTCT CCTCGACCTA CATCATCCTG
TTCATCACCT TCGCCGCCTT CCTGCAGGTC TCCCGGGTGG GGGACTACTT CGTCAACTTC
GCCTTCGCGG TGGCCGGCTG GGCCCGCGGC GGTCCGGCCA AGGTGTCGAT CTTCGCCTCC
GGGCTGATGG GGATGATCAA CGGCACCTCC GCCGGCAACG TGGTGGCCAC CGGCAGCCTG
ACCATCCCGC TGATGCGCAA GGTGGGCTAC CCGGCGAAGA GCGCCGGCGC CATCGAGGCG
ACGGCCTCCA CCGGCGGACA GCTGGTGCCG CCGATCATGG GCGCCGGGGC GTTCATCATG
GCGGAGATCA CCGGCATCCC GTACGTGGAG ATCGTCGCCG CCGCCATCCT GCCGGCCGCG
CTCTACTTCC TGTCGGTCTA CTTCATGGTC GACAACGAGG CGGCCAAGAT GGGCATGCGC
GGCCTGCCCC GGGCCCAGCT GCCCGCATTG GGGCGGATGC TGCGGCAGGT CTATCTGTTC
ATTCCCATCC TGGTGCTGAT CTTCACCCTG TTCCAGGGCT ACTCGGTGAT CCGCGCCGGG
ACCGTGGCGA TGATCTCGGC GGTGGTGGTC AGCTGGCTGA CCCCGGAGGC GATGGGCATC
CGCCGCATCC TCCGCGCCCT GGAGATGGGC GGGCGCATGG TCATCCCGCT GGTGGCGGTG
TGCGCCTGTG CCGGGATCAT CGTCGGTGTG ATCAGCCTCA CCGGGGTGGG CACGCGCTTC
TCGTCGATGC TGCTGGGCGT GGCGGACGCC TCCATGCTGC TGGCGATGTT CTTCGCCATG
TGCATCTCGA TCATGCTCGG CATGGGCATG CCGACCACGG CCGCCTACGC GGTGGCGGCC
TCCGTGGTGG CCCCCGGGCT GCAGCAGCTC GGTGTGGAGC CGCTGGTCGC CCACTTCTTC
GTCTTCTACT ACGCAGTCAT CTCGGCAATC ACCCCGCCGG TGGCGCTGGC CGCCTACGCC
GCCGCCGGCA TCGCCGGCAC CGACCCGCTG CGCACTGCGG TGACGGCGTT CAAGATCGGG
CTGGCTGCGT TTATCGTGCC GTTCATGTTT TTCTACAGTC CGGCGATACT CGGCGAGGGT
ACGTGGACGG AGATCGCCCG GGTCGGGGTG ACGGCTTCGG TGGGCATCTT TCTGCTGGCT
GCCGCGGTGC AGGGCTGGCT CTTCGGCCAC GTACCGTGGC TGCTGCGCGG TGTGCTGCTC
GCCGGCGCGA TCTCGATGAT CTACGGCGGA ATCTACAGTG ACCTGGCCGG CATCGCCCTG
GGCGCCGTGC TGATGGCCTG GCAGTACCGC TTCGCCTCGC GCCAGCCGCT GGTGCCGAGC
CAGGGCGGGT AG
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| Protein sequence | MSDRSTTADS TIEAQGETEI PLGANERALT GWQKQLFFWA CALYTAFHIF TLNVAPLETW
TFRILHIAGG LFIGFALTSA RTLDRNAPAA PMGVLQWLIL LASTALMLWA LGALAYVGYL
LEVDGISSTQ LPPWLAKQFG YTLFASVAVA TLAGWFLRSP DNRVHWPDWI LGFGALMVGA
YIVMALGRWQ MAAGTPFAGE QELWISAAGV LLILELTRRI AGLALVIITG VFLVYSFVGP
WLPGFLEHRG YSFTRFFTYL YTDSGILGPT TAVSSTYIIL FITFAAFLQV SRVGDYFVNF
AFAVAGWARG GPAKVSIFAS GLMGMINGTS AGNVVATGSL TIPLMRKVGY PAKSAGAIEA
TASTGGQLVP PIMGAGAFIM AEITGIPYVE IVAAAILPAA LYFLSVYFMV DNEAAKMGMR
GLPRAQLPAL GRMLRQVYLF IPILVLIFTL FQGYSVIRAG TVAMISAVVV SWLTPEAMGI
RRILRALEMG GRMVIPLVAV CACAGIIVGV ISLTGVGTRF SSMLLGVADA SMLLAMFFAM
CISIMLGMGM PTTAAYAVAA SVVAPGLQQL GVEPLVAHFF VFYYAVISAI TPPVALAAYA
AAGIAGTDPL RTAVTAFKIG LAAFIVPFMF FYSPAILGEG TWTEIARVGV TASVGIFLLA
AAVQGWLFGH VPWLLRGVLL AGAISMIYGG IYSDLAGIAL GAVLMAWQYR FASRQPLVPS
QGG
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