| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0343 |
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| Symbol | |
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| ID | 4711313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 395767 |
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| End bp | 398226 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639854806 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001001939 |
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| Protein GI | 121997152 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0947891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCGGGCA ACAGCAACCC CACTCGACAC CCGCCAGGTA CCACCGCCAC GCCGGCGACG
ATCGCCGCAT GGGGATCAGC GGAGTGCGAC TGGCTGCGTG CCCTGGACGC CATCTCCGAA
CCGGTCTTCA TCCACGACGA GCACTACCGC ATCCTGGCGG CCAACCGGGC CTACGCCGAG
CGCGCCGGGC TAACCCCCGA AGAGTTCCGC CAACGCCCTT ACTGGGAAGT CTTCCCGCAT
GGGGACGGAC CACTGCCCAG CTGCCGGGCT GCCATGGATC AGGGCGGGTG CGGCCAGCAC
CGCAACCACC GCGGGGAGAT CACCGAGGAG CTGGCCCTAC CCAGCGGCGA GGTCTTCATC
TCTCGCTCCT TCGCCGTCAC CGACGCCACC GGCCACTATA AGCAGTCGGT GCACATCCTC
GAGGACGTCA CCGAGCAGCG CCGGCGCGAG CACCGACTCA GCGTAGCCGA GTCCCGGGCC
CGGGAGCGCG AGCACCAGCT CGACCGCGTG CTGAGCAACA CCGCCGAGGG CATCCTGGTT
GTGGACGAGC ACGGCCGGAT CGTCTACGCC AACGCCACTG CCGGCACCCT GACTGGCCAT
TCGCCCGCGG AGCTGATCGG CCAGGATTTC GGCTTCCCGG TGGCCACCGG GAGCCCTGCA
GAGATCGAGC TGCACACCAG CGGCAACGGC AACCGCATTG TCGAGATGCG CGCCCGGACC
ATGCGCTGGG AGGGCAAGCC GGCCTTCGTC CTCAACCTCC ACGACGTCAC TGAACGCAAG
CGCGTCGAGC GGGAGCTGCG CCAGGCGGCC ATCGTCTTCG AGGAGGCCCG GGAGGGGGTG
ATCATCACCG ACGCCGAGGC CAACATCGTC GCCGTCAACC ACGCCTTCAC CCAGATCACC
GGTTACGATG AGGATCAGGC CCTGGGGTGC AACCCCCGCT TCCTCGCCTC CGGCTTCCAC
ACCCCAGCCT TCTACCAGGC CATGTGGGAG GCGATCCGCA GCCACGGCTA CTGGACCGGC
GAGATCTGGA ACCGCCGCAA CGACGGCACC ACTTTCGCCG AGCTGGCCAC CATCCGCGAA
CTGCGCGATG AATCCGGACG CCCGACCCAC TACATCGGGG TCTTCTCGGA CATCTCGCGG
ATCAAGGAGT ACCAGACCCA GCTCGAACGG GTCCTTCACC TGGATCCGCT CACCGAGCTA
CCCAACCGGC TGCTCTTCCA CGACCGCCTG GAACAGGCCC TACGCCAACA CCAGCGCCAG
CGGACCAATG AGAACGCCGT GGCGGTGCTG GTCGTCGATC TGAGCGACTT CCGCGCCGTC
AATGACAGCC TCGGCCACGC CATCGGCGAT CGCACCCTGC GCATCGTCGG CGAGCGCCTG
GACTCCGCCA TGGGCGATTC GGCCACCGTG GCCCGGCTCA GCGGTGACGA GTTCGGCGTG
CTGCTGCCGC AGCTGGCCAC CGCCGACGAT GCCGCCAGCG CCGCCGAGCG GCTGATTGAG
GCCGCCGAGG CGCCGCTGGA GATCGACGGC CACCAGATCC CGATCACCCT GCGCGTCGGG
CTGAGCACCT TCCCGGACCA GGCCCAGGGG GCCAATGTAC TGCTCGAGCA GGCCGACGCG
GCCATGTACG AGGCCAAGAG CGAGGGCGTG AGCTACCGCT TCTTCAGCGA GGAGCTGACC
GAGCGCGCCC GCGAGCGCAT CGAACTCGGT GCCGAGCTGC GTCAAGCGCT GGCCGGCGAG
GAGCTCGCCC TGCACTTCCA GCCCCAAGTA GACCTGGACA GCGGACGCTG GATCGGCCTC
GAAGCGCTAC TGCGCTGGCC CCATCCGCGG CGTGGCCCGA TCTCGCCGGG GCGCTTCATC
CCGGTGGCCG AGCGCACCGG GCTGATGTGC CAGCTCGGCG CCTGGGTGCT GCAGCGCGCC
TGCCGGCAGT ACCAGACCCT GCTCGACGCC GGTCAGGACT GGGGCCGCCT GGCGATCAAC
ATCACCGCCC CCGAGCTGGC CGACCCCACC TTCGTCGAGC GGGTGATGCG CACCCTGGAG
GAGACCGGGC TGGCGGCGGA GCGCCTGGAG CTGGAGATCA CCGAGAGCCT GCTGGTCAAC
ACCGACGAGC GCATCATCGA GCGGCTCGAC GCGCTGCGCC GGCACGGTGT ACGGGTGGCG
GTGGACGACT TCGGCACGGG TTACTCGGCG CTGAGCTACC TCAAGGACCT ACCGGTGGAC
CGGCTGAAGA TCGACCGCTC CTTCATCGAC AACGTCGATC AACCCTCCCG GGGGGCGACC
ATCACCCGCG CCATCCTCGC CCTCGGCCAG AGCCTGGAGC TGGAGGTGAT CGCCGAGGGC
ATCGAGACCG AGGCCCAGCG TCGCACCCTG CAGGAGGCCG GCTGCCTGCA GGGCCAGGGC
TTCTTCCTCG CGCGGCCCGC CCCACTGGAG CAGCTCCGCC CACCGGACCC GGCGCCGTAG
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| Protein sequence | MSGNSNPTRH PPGTTATPAT IAAWGSAECD WLRALDAISE PVFIHDEHYR ILAANRAYAE
RAGLTPEEFR QRPYWEVFPH GDGPLPSCRA AMDQGGCGQH RNHRGEITEE LALPSGEVFI
SRSFAVTDAT GHYKQSVHIL EDVTEQRRRE HRLSVAESRA REREHQLDRV LSNTAEGILV
VDEHGRIVYA NATAGTLTGH SPAELIGQDF GFPVATGSPA EIELHTSGNG NRIVEMRART
MRWEGKPAFV LNLHDVTERK RVERELRQAA IVFEEAREGV IITDAEANIV AVNHAFTQIT
GYDEDQALGC NPRFLASGFH TPAFYQAMWE AIRSHGYWTG EIWNRRNDGT TFAELATIRE
LRDESGRPTH YIGVFSDISR IKEYQTQLER VLHLDPLTEL PNRLLFHDRL EQALRQHQRQ
RTNENAVAVL VVDLSDFRAV NDSLGHAIGD RTLRIVGERL DSAMGDSATV ARLSGDEFGV
LLPQLATADD AASAAERLIE AAEAPLEIDG HQIPITLRVG LSTFPDQAQG ANVLLEQADA
AMYEAKSEGV SYRFFSEELT ERARERIELG AELRQALAGE ELALHFQPQV DLDSGRWIGL
EALLRWPHPR RGPISPGRFI PVAERTGLMC QLGAWVLQRA CRQYQTLLDA GQDWGRLAIN
ITAPELADPT FVERVMRTLE ETGLAAERLE LEITESLLVN TDERIIERLD ALRRHGVRVA
VDDFGTGYSA LSYLKDLPVD RLKIDRSFID NVDQPSRGAT ITRAILALGQ SLELEVIAEG
IETEAQRRTL QEAGCLQGQG FFLARPAPLE QLRPPDPAP
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