Gene Hhal_0302 details

Gene Information

• Locus tag: Hhal_0302
• ID: 4711212
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 338248
• End bp: 340260
• Gene Length: 2013 bp
• Protein Length: 670 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 639854762
• Product: putative Chase2 sensor protein
• Protein accession: YP_001001898
• Protein GI: 121997111
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4252] Predicted transmembrane sensor domain

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCGACCC CCCTGCGCAA CCGCCTCGCT CCCCTGGCCA TCGGCCTCCT GCTCCTCGCC 
CTGGTCCTCG GCGCCACCCG CAGCGACTGG CCGCCCCTGC GCGACGCCGT ACAGACCGCC 
GAGCACTTCA TCTACGACCA GCGCCTGGTC TGGTCCCAGC GGACCGGCAT CGAGCAGCAC 
GACGATGCCG AGATCGTCAT CATCGACATC GACGAACGCA GCCTGGGCGC CGTTGGCCGC 
TGGCCTTGGC CGCGGGCGAC CATGGCCGAT CTGCTGGAGC AGCTGTGGGC CGCCGGCACC 
ATCGTCGTCG CCTTCGATAT CGTCTTCGCC GAGCCCGAGC GCAATCCGGC GGAGCGGGTG 
GCCCGCGGGG TCGACGACCC GGCGCTGCGA GAACGCCTCG GTGAACTCGC TCCGCGATTC 
GACGGCGACC GGCACCTGGC CGAGCAGCTG GCGCGCGGCG ACGCGGTGCT CGGCTTCTTC 
CTGCACCGTG ACGAGACCGC CACCCATACC GGCACCCTGC CCGAGCCGGC TCGAGGCGCG 
GAGGAGCTGG GCACCGGGAC GCCGGTGATC CACCGTTTCC AGGCGTACAC CGGCAACCGC 
CCTGCACTCC AGGAGGCGGC CACCGGCGCC GGCGCCTTCA GCGTCATCCC CGACGCCGAC 
GGCGTGGTGC GCCGGGCGCC GCTGCTGCTG GGCCACGGCG ATGCCGTCTA TCCGGGCCTG 
GCGCTGGAGA CGGCGCGGGT CTATCAGCTG CTCGACGACT TCCGGGTCGA GACGGTGGCC 
CTCGGCGCGC ACACCGCCGT AGACGCCATC GAGCTCGGCG CCGCCCGGCT GCCCACCGAC 
GCCCGGGGCC AGGCCCTGAT CCCCTACCGC GGCCCCCGGG GCAGCTTCCC CTACATCAGC 
GCCGTGGACC TACTCCGCGG TGAGACCGAC CCCGACGCCC TGGAGGGCGC CATCGCCCTG 
ATCGGCACCA GCGCCATGGG CCTCTACGAC CTGCGCCCGA CCCCGACCGA TGCGGCCTTC 
CCCGGCGTCG AGATCCACGC CAATCTGCTT GCCGGCATCC TCGCCGACGA CCTCCCCCGG 
AAGCCGGCCT GGGTGGACGG CGCCAACCTG GTCACCACGC TCACCGCAGG CCTGGTTGCC 
GCCGGGCTGC TGCCGTTTCT CGGCCCGCTG GCCACGCTGG CCGTAACGGC CGGGCTGCTG 
GCCCTGCTCG TCGGCGGCAA TCTGTGGGCC TGGGCCCAGT GGGATCTGGC CCTGGGCGCC 
GCCGGCCCCC TGGCCGCGGT CCTGCTGATC GGCGCCGGGA ACCTGACCTG GGGATTCCTG 
TTCGAGCACC GCCGCCGCCA CCAGCTGCGC CAACGCTTCG GCGAGTACGT CCCGCCGGAG 
CTGGTGGAGC GCATGGCCGA GGCGCCCACC GCCTACACCC AGACGGGGGA AACCCGCGAG 
ATCACGGTGC TCTTCGCCGA TATCCGCGGC TTCACCACGC TCTCCGAACG GCTCGACGCG 
GTGGCCCTGC GCGAGCTGCT CAACCGCTTC TTCACCCCCA TGACCCGGGT CATCTTCGAG 
CACGGCGGGA CCATCGACAA ATACGTGGGG GATCTGATCA TGGCCTTCTG GGGGGCGCCC 
ATGGACGACC CGGAACACCG CCGCCACGCC GTCGCCGCCG CGCTGGCCAT GCAGCGCGAG 
GCGGAACGCC TGCGCGAGGA GCTGGCCCGC GAGGGGCTGC CGGCGATCGA GATCGGCATC 
GGCCTGAACT CCGGACCCGC CGCCGTCGGC GACATGGGTT CCGCCTATCG CCGCGCCTAC 
ACCGCCCTGG GCGACGCCGT GAACCTGGCC TCCCGGGTGG AGGGGCAGAC CAAGGCCTAC 
GGCGTCGGGC TCCTGGTCAC CGAGCACACC CGTGCCGGCC TGGAGACGGT TTACGGGTTC 
CGCGAGATCG ATCGGATCCA GGTCAAGGGC CGCAGCCAAC CGGTCACGCT CTACGAGCCG 
GTCGAGGCCA CGCAGTCACC TGCAGAAACC TGA 

 

Protein sequence

MPTPLRNRLA PLAIGLLLLA LVLGATRSDW PPLRDAVQTA EHFIYDQRLV WSQRTGIEQH 
DDAEIVIIDI DERSLGAVGR WPWPRATMAD LLEQLWAAGT IVVAFDIVFA EPERNPAERV 
ARGVDDPALR ERLGELAPRF DGDRHLAEQL ARGDAVLGFF LHRDETATHT GTLPEPARGA 
EELGTGTPVI HRFQAYTGNR PALQEAATGA GAFSVIPDAD GVVRRAPLLL GHGDAVYPGL 
ALETARVYQL LDDFRVETVA LGAHTAVDAI ELGAARLPTD ARGQALIPYR GPRGSFPYIS 
AVDLLRGETD PDALEGAIAL IGTSAMGLYD LRPTPTDAAF PGVEIHANLL AGILADDLPR 
KPAWVDGANL VTTLTAGLVA AGLLPFLGPL ATLAVTAGLL ALLVGGNLWA WAQWDLALGA 
AGPLAAVLLI GAGNLTWGFL FEHRRRHQLR QRFGEYVPPE LVERMAEAPT AYTQTGETRE 
ITVLFADIRG FTTLSERLDA VALRELLNRF FTPMTRVIFE HGGTIDKYVG DLIMAFWGAP 
MDDPEHRRHA VAAALAMQRE AERLREELAR EGLPAIEIGI GLNSGPAAVG DMGSAYRRAY 
TALGDAVNLA SRVEGQTKAY GVGLLVTEHT RAGLETVYGF REIDRIQVKG RSQPVTLYEP 
VEATQSPAET