Gene Hhal_0282 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_0282 
Symbol 
ID4711184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp318575 
End bp320152 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content70% 
IMG OID639854742 
Producttranscriptional regulator NifA 
Protein accessionYP_001001878 
Protein GI121997091 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
TIGRFAM ID[TIGR01817] Nif-specific regulatory protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.262632 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAACC CCATGCCCGT CGGCCCCCGC GAGCGCGCCC GGGCCGAACT GGTCGAGGCC 
CAGCTCGAAG CGCTCTACCA GGTCAGCCGC GTCCTCTCCC GCAGCCTCGA CCTGCGCGAT
ACGCTCCAGG CCGTGCTCGA AGTGCTCCAC GAGCACGCCG ACATGCACTC CGGGATGGTC
GCCCTGCGCG ACCCGGTGCG CCGCGAGACC ATCGTCCGCG CGCTGCACGG TCAGACCCCC
TCCAATGAGG TCATCTACCG TCCCGGCGAG GGGATCGTCG GCGAGATCCT CAACCAGGCC
GAGCCGCTGA TCGTCCGGCG CATCTCCGCA GAGCCTCGGT TCCTCGATCG GCTCGGCCTC
TACGATCCGG ATCTGCCGTT CATCGGCGTT CCCATCAACG GTCCCGGCGA ACACGACCCG
CCGGTGGGCG TGCTCGCCGC GCAGCCCGCC GCCGACGAGG GCGCGTTGCT GGCGGAGCGT
TCGCGGTTCA TGCAGATGGT CGCCAATCTG GTCGCCCAGA CCGTGCGCCT GGCCACCGAG
GTCGAGCGCG AGCAGGCGGC CATTGTCGAT GAGCGCGATC GCCTGCGCCG GGAGGTGCAA
GAGAGCTACG GCTTCGAGAA CGTCATCGGC CGCACCCCGG CCATCCGCCG CGTCTTCGAA
CAGGTGCGCC GGGTCGCACA GTGGAGCACC ACGGTGCTGC TGCGCGGCGA GTCCGGCACC
GGCAAGGAGC TGCTGGCCAA CGCCATCCAC TACAACTCGC CGCGGGCCGA CGCGCCCTTC
GTCAAGCTCA ACTGCGCGGC GCTGCCCGAC AGCCTGCTCG AGAGCGAGCT CTTCGGCCAC
GAGAAGGGGG CGTTCACCGG CGCCGTGCAG AGCCGGGTGG GGCGTTTCGA GCAGGCCGAC
GGCGGCACCA TCTTCCTCGA CGAGATGGGC GAGATCTCGC CGGCCTTCCA GGCCAAGCTG
CTGCGCATCC TCCAGGAGGG GGAGTTCGAG CGGGTGGGCA GCACCCGCAC ACGGCATGTG
GATGTGCGCG TGCTCGCCGC CACCAACCGC GATCTGGAGG CGGCGGTCGC TGCCGGCGAG
TTCCGCGAGG ACCTCTACTA CCGGCTCAAC GTGATGGCCA TCACCATGCC CGCGCTGCGC
GAGCGGCTCG AGGATGTCCC GGAGCTGGCT CGCTTCCTGG TCGGACGCAT CGCCGACGTT
CAGCAGCGGG CGCTGGATAT CTCCGACGAC GCCATCCGTA CGCTGATGCG CTACCACTGG
CCGGGCAATG TCCGCGAGTT GCAGAACGCC CTGGAGCGGG CGGCGATCAT GAGCGAGGAC
GGCCACATTG ATCACGAGGC GCTGCTCCTC GCCGGCATCC CCGAAGACGG TTCGGGGCCC
GCCGGCAATG GAGTCTTGCC TGCCGGGCCG GCGGCGCCGG ATCCCAACGA CCCGGCGCTG
GATGAGCGCG AGCGGGTGAT CGCCGCCCTT GAACGCACCG GCTGGGTGCA GGCCAAGGCG
GCGCGCCTGC TGGGCATGAC GCCGCGGCAG ATCGCGTACC GGATCAAGAC CCTGGATATC
CCGGTGAAGA GCCTGTGA
 
Protein sequence
MENPMPVGPR ERARAELVEA QLEALYQVSR VLSRSLDLRD TLQAVLEVLH EHADMHSGMV 
ALRDPVRRET IVRALHGQTP SNEVIYRPGE GIVGEILNQA EPLIVRRISA EPRFLDRLGL
YDPDLPFIGV PINGPGEHDP PVGVLAAQPA ADEGALLAER SRFMQMVANL VAQTVRLATE
VEREQAAIVD ERDRLRREVQ ESYGFENVIG RTPAIRRVFE QVRRVAQWST TVLLRGESGT
GKELLANAIH YNSPRADAPF VKLNCAALPD SLLESELFGH EKGAFTGAVQ SRVGRFEQAD
GGTIFLDEMG EISPAFQAKL LRILQEGEFE RVGSTRTRHV DVRVLAATNR DLEAAVAAGE
FREDLYYRLN VMAITMPALR ERLEDVPELA RFLVGRIADV QQRALDISDD AIRTLMRYHW
PGNVRELQNA LERAAIMSED GHIDHEALLL AGIPEDGSGP AGNGVLPAGP AAPDPNDPAL
DERERVIAAL ERTGWVQAKA ARLLGMTPRQ IAYRIKTLDI PVKSL