| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0254 |
|---|
| Symbol | |
|---|
| ID | 4711136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 290629 |
|---|
| End bp | 291378 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639854714 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001001850 |
|---|
| Protein GI | 121997063 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAGACCG CAGACCAGGA CGATCGCAGC CTCGCCATAC TCTACCGGGA TGAGCGGCTG
ATCGCCGTCT ACAAGCCCGC CGGGCTGCTG GTCCACCGCA GCAACATCGA CCGCGACCGG
GACGTGGTCC TGCAGCGCCT CCGCGATCAG CTCGGCGGGC ACTGGGTCTA TCCGGTCCAC
CGGCTCGACC GTGCCACCGC CGGCGTGCTG GTCTTCGGCC TCGATCCCGA TGCCGCCTCG
GTCCTGGCTG CCGCCTTCCG CGAGCAACGC ATCGGCAAGC GCTACCAGGC CGTGGTCCGC
GGCTGGGTGG AGGCGCCCGG ACGCATCGAT CGGCCCCTGG GGGCGGGGCG ACGGGGTGAG
GGGGGCGCGC CGCAGCCGGC GGTGACCGAT TACGTGCCGC TGGCCTGGAC GGAGCTGCCC
ATTCCGGTCT CGCGCTACGA CACCGCCCGC TTCACCCGGC TGGCGCTGCA TCCGCAGACC
GGCCGGCAGC ACCAGCTGCG CCGCCACATG AAGGCGATCA GCCACCCGAT CCTCGGCGAT
ACCACCCACG GCGATGGCGC CAACAACCGG TTCTTCCGGG AACACTTCGG TGCCCGGCGG
CTGCTGCTTG TGGCCACGGA ACTGGTCGTC CCCCACCCCG CGGACGGGGG CGCCGTGCGC
CTGGCCACGG AGCCCGATGC CGAGCTCCAG GCCATCTTCC GCCGGGCGGG CCTGGGAGAG
GCGCCGTCCC CCGCCGACGA GGCCGGCTAG
|
|---|
| Protein sequence | METADQDDRS LAILYRDERL IAVYKPAGLL VHRSNIDRDR DVVLQRLRDQ LGGHWVYPVH
RLDRATAGVL VFGLDPDAAS VLAAAFREQR IGKRYQAVVR GWVEAPGRID RPLGAGRRGE
GGAPQPAVTD YVPLAWTELP IPVSRYDTAR FTRLALHPQT GRQHQLRRHM KAISHPILGD
TTHGDGANNR FFREHFGARR LLLVATELVV PHPADGGAVR LATEPDAELQ AIFRRAGLGE
APSPADEAG
|
|---|
| |