| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0173 |
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| Symbol | |
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| ID | 4710839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 201857 |
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| End bp | 204328 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639854631 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001001769 |
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| Protein GI | 121996982 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.348272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCGGA CGCGGCGATT CCACCCGCGC TGGCTGCCCC TGGCGGTGTC GATCGCCTAT
GCCGTCCTCG GCCTGTTCTG GATCCTGGCC ACGGATGGGT TGCTGATTGC CTGGTTGCCC
GCGGAGTGGC TGCCGGTGGG GCAGGTGGTC AAGGGGGTGG CCTTCATCCT GGTCACAGCC
GGGCTGCTCT ACCTGCTATT GAGACGGCTG GCCCGGGCGG CCCGGGAGCG CGAGGATCTG
CACGGGCAGT TCAGGAGCTT CGAGACGCTG GCCGAGCATA TCCCGGACGT GCTGGTGCGC
CTCGATAACC AACTGCGTTA TCTCTACGTC AACCCCGCTT TCGAGGCGCT TACCGGGGTC
GACCGGCGGG AAGCCCTCGG GCGTTGCCAG GAGGAGGTCG GCTATCCGCC GCCGTCGCCA
CAGTGGCAGG CGTTGCTCGA GCGGGTCCGA GATTGCGGGC AACCCGAGAC GCTCAGTTTC
GAGTTCACCG ATGTGCGCGG GCAAACCTGC TCGCTCCAGG CGCGCCTGGT CCCGGAGTTC
GACGCGGGCG GGCAGGTCGT GTCGATGCTG GCCTTGGTGC GCGACCTAAC CGAGCTCAAC
CGAGCGCACC AGCGCGTCTC GCAGCTGGTG CGGCTCTACG CGGCGCTGAG TGCCACTAGT
CAGTTGATCG TGCGCCTGCC GGAGCGCTCG GCTCTGTTCC AAGAGGTGTG TCGCATCGTG
GTCCGCCACA CGGATCTGCG CCTGGCGTGG ATCGGTCTGG TCGACGCCGA GACCCGCCAA
GTCGTGCCAC AGGCCTGGGA GGGCGACCAG GCCGGGGTGG CGTATTTGGA AACGATCCGG
GTCAGCGCCG ATCCCGCCAG TGCCGAGGGG CGGGGGCCGG TAGGACGCGC CATCAACGAG
GATCGGCCCG TGGTCTTCGA GGATTTCCTG GGGGCGCGGG AAGCCGCGCC GTGGCGGGCG
GCTGCGACGC AGGCGGGGTT CGGTGCCGTG GCCGCCTTTC CGCTGCGTCA CGGCGGCGAG
CCGGTTGGCG CCCTGGCCGT TTACGCCCCG GAGGCGGGTT TCTTCAGCGA GGAGATCCGG
TCGTTGCTGG TCGAGCTGGC CGAAGACGTG GGCTTTGCCC TGGACCACTC CGCGCAGCTG
CAGTATCTGG CCGAACACGA TCTGACCACC GGGCTGCCCA ACCGTTCCTG GCTGCTGGGG
CGCGTCGCCC AAGGCATTCG GCGTGCCAGC GACAGTGAGC GTTTCGCCGT AGCCTTCGTC
GACCTGGACC GTTTCAAGGT CGTCAACGAC AGCCTCGGCC ACGATGCCGG TGATCAGCTG
CTGCGCCAGG TGGCCGAGCG GCTGGGCGAA ATGGTGCGGT CGGGGGATGA AGTGGGGCGG
CACGGCGGCG ACGAGTTCTT GATGCTGCTC CACGACTTGG AGTCGACGGA GCAGGTGGCG
CAGCTTGTAC AGCGGGTTCT CAACCGCTTC CGCAAGCCAC TGCGGATCGA CGGCCGCGAG
GTTGCGGTGA CACCGAGCGT GGGGTTGAGC GTCTACCCCG GCGATGCGGC GGACGCCGAC
GGCATGGTCC GCGCGGCCGA CACCGCCATG CACCGCGCCA AGGATGAGGG CGGCAACCGC
TACCGGTTCT TTACCGAAGA GATGAATCGT GAGGTCCGCC AGCGCGTCGA GCTGGAGGCG
ATGCTGCGCA ACGCGGAGCA ACGTAACGAG CTCGAGTTGT GGTATCAGCC TCAGGTTGCC
CTGAGCACCG GGCAGGTGGT CGGCGTTGAA GCGCTGCTGC GCTGGCACCA CCCGGATCGG
GGCTGGATCT CGCCCGGTGA GTTCATCCCC GTCGCCGAGG AGAGCGGGTT GATTGGAGCC
ATCGGTGAGT GGGTGATCGG GCGCGCTTGC GATCAGGCTG CGGAGTGGCG GGGCCGCGGG
GTTCTGCAGG TGCCGGTGGC GATCAATCTC TCGGCGGCGC AGCTGCGCGG GACGGGTCTC
CCGGCGGTCA TCCAGCGGGC GCTGGGGCGT CGCTCGCTGC CTGCCGAGGC GCTGCAGCTG
GAGATGACCG AAAGCCTCTT CTTCGAGGAC GACGTGAACG TGCGCACGGC CATCGCCGAA
CTCCAGTCCC GGGGACTGCA GCTGGCCGTG GACGACTTCG GCACCGGCTA TTCCAATCTG
GGTTACCTGA AGCGGTTGCC CTTGGCCAAG ATCAAGATCG ACCAGTCCTT CATCCACGGC
GTGCCGGAGG AGCCCGAAGA CTGTGTCATC ACCCGCGCCA TCATCCATAT GGCCCAGGGT
CTGGGGCTGC GGGCGATTGC CGAGGGGGTG GAGCGGCCCG AGCAACTGGA GCTGCTGCGC
CAGCTCGGGT GCGACGAGGT GCAGGGGTAT CTGTTCAGCC CGCCGGCGCC GGCCGCCGCC
CTGGAGGCCC GCTTGGCCGA GGGCGGAGAC TGGGGCGGCA TGCCGGCCGC CGGTCGCGGC
GCGGCCGGTT AG
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| Protein sequence | MDRTRRFHPR WLPLAVSIAY AVLGLFWILA TDGLLIAWLP AEWLPVGQVV KGVAFILVTA
GLLYLLLRRL ARAAREREDL HGQFRSFETL AEHIPDVLVR LDNQLRYLYV NPAFEALTGV
DRREALGRCQ EEVGYPPPSP QWQALLERVR DCGQPETLSF EFTDVRGQTC SLQARLVPEF
DAGGQVVSML ALVRDLTELN RAHQRVSQLV RLYAALSATS QLIVRLPERS ALFQEVCRIV
VRHTDLRLAW IGLVDAETRQ VVPQAWEGDQ AGVAYLETIR VSADPASAEG RGPVGRAINE
DRPVVFEDFL GAREAAPWRA AATQAGFGAV AAFPLRHGGE PVGALAVYAP EAGFFSEEIR
SLLVELAEDV GFALDHSAQL QYLAEHDLTT GLPNRSWLLG RVAQGIRRAS DSERFAVAFV
DLDRFKVVND SLGHDAGDQL LRQVAERLGE MVRSGDEVGR HGGDEFLMLL HDLESTEQVA
QLVQRVLNRF RKPLRIDGRE VAVTPSVGLS VYPGDAADAD GMVRAADTAM HRAKDEGGNR
YRFFTEEMNR EVRQRVELEA MLRNAEQRNE LELWYQPQVA LSTGQVVGVE ALLRWHHPDR
GWISPGEFIP VAEESGLIGA IGEWVIGRAC DQAAEWRGRG VLQVPVAINL SAAQLRGTGL
PAVIQRALGR RSLPAEALQL EMTESLFFED DVNVRTAIAE LQSRGLQLAV DDFGTGYSNL
GYLKRLPLAK IKIDQSFIHG VPEEPEDCVI TRAIIHMAQG LGLRAIAEGV ERPEQLELLR
QLGCDEVQGY LFSPPAPAAA LEARLAEGGD WGGMPAAGRG AAG
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