Gene Hhal_0128 details

Gene Information

• Locus tag: Hhal_0128
• ID: 4710651
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 146598
• End bp: 148508
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 639854586
• Product: diguanylate cyclase
• Protein accession: YP_001001724
• Protein GI: 121996937
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.308364
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACGGAGC CGGCGGAGGA TCCACAGACG GCACGGCGTG CACCATCGGC GTTTCAGCGC 
CTGTACATCG CTGGGCCGTT GCTGCTCGCC GTCGGGATCC TCCTCGGCGT CCTGATCTTG 
GCCGGTCTGG TGGGGCATTG GCTCGAGGAG TACCGGCTGG AGCAGGCGCG CGGGCAAGTG 
ACCGAAGAGG CCTCGGCCCT GCGGGGCCGG ATCGAGGGCG AGCTGAACGC GTCGGTCTCG 
CTGGTGGCCG GGCTGAGTGT GCTGGTCGGG GCGGATCCCG ACCTGGACGG CGAGCGTTTC 
GCGGCCATTG CCCGGCGCAT GATGCGTCCC GAGTTCCACA TCCGCAATAT CACACTCGCG 
CCGAACAACG TCATTCGCTA CGTCTATCCG CTGGCCGGCA ACGTTCGTGC CCTGGGGCTG 
GACATCGGTG AGCATCCGGT CCAAAGGGCC AGCCTCCACC GGGTCATGGC GACCGGGGCA 
CCGGTCGTCG CAGGCCCCAC GGAGTTGGTC CAAGACGGGG AGGCCCTGAT CGTGCGCGTG 
CCGATTTATG AGGATGACGG CAGCTACTGG GGGGTGGCCA GTGTACCGCT GGAGCTGGAG 
CGCTTCTACA CCGCCGCCGG GCTTCGGGAT GTCGGGGAGT CCGGCCTGCA AGTGGCCCTG 
AAAGGCCGGG ATGGCCTTGG CGAAATGGGT GAGGTGTTCT TCGGTGAGCC GGATGTCTTC 
AAGCGAGATC CGGTGACCAT GGGCATCGTG TTTGGTGCGT CGAGCTGGCA GCTGGCGGCC 
ATTCCGCAGG GCGGGTGGCA GGCGCAGGCC TCGGTGCCGG CCTGGTGGTG GTGGGCATGG 
GGCGGCGGGG GTCTCATCCT CGCCGCTCTC ACCGGTCTGC TCGCCCGCCA GGCCCTGCGG 
ATGCGTTTCC TCAAGGACCG CCTGGAGGCG ATCATGGCCA CCGTCCCCGA TCTGGGGTTC 
GTGATTGATG ATCGCGGGCA GTTCCGGGAG GTCTTCGGCG GGCAGGAGCG GCGGTTGTAT 
CGGGATCTTC GCAGCCTGCT CGGGCGGCGG CTCCACCAGG TCGTCAGCTT TGAGCTGGCC 
GAGCGTTTCC TTGAAAGTAT CCATCAGGCC CTCAACGAGC GTCGCCTGGT CATCCTGGAT 
TACCAGTTGG ATCTGGACCA GATCGAGGGT GGTGGCGAGG GTGGGCCGCA CGGCTGCCAG 
TGGTTCGAGG CGCGAATCTA TCCGCTGCCG TCGGGGCTGG AGGCGCGCCC GTCGGTGCTG 
TGGCTGGCCT ACAACGTCAC CGAGCGGATG CAGGCCCTGG CGGAGGCCGA GCGAAGCCAG 
GAACAGATGC GCCACATGGC GCTGCACGAT CACCTGACCG GTCTGGCGAA TCGGGCGCTG 
CTGCTCGATC GCCTGGAGAA GGCGCTGGAA TGGGCGCGAC GGAATCGGGA GGCGGTGGCG 
CTGCTGTTCA TCGACCTCAA CCACTTCAAG CCGATCAACG ACGAGCACGG CCACGAGGTC 
GGCGACCGGG TCCTTCAGCA GTTGGCCAGG CGGCTCACGG GAGCCGTTCG CGAGGTGGAC 
ACTGTCGCCC GCCACGGTGG CGACGAGTTC GTTATCCTGC TGGAGGGGGT CGATGGGCGG 
CGCGCTGCCG AGCGGGTGGC CGAGAATATC GTCGCCAGTC TCGACGAACC GGTGATCGTC 
AACGGACGCC GCTTCCAGGT CTCACTCAGC ATCGGTATCG CCATCTATCC CGAGCATGGG 
GTATCGGCCG ACGAACTCCA GCGGGTTGCC GATGACGCCA TGTATGTCGC CAAGGCGGAT 
CGCACGCGCA GTACCTACGC GTTTGGCGCG CCGGCAACGG GGGAGTCGGG GTCGACTAGC 
GCAGCAGCAG CACCGCCGCC ACCGGGCGAT CCTCGCCCAG GAGAAGGTTG A 

 

Protein sequence

MTEPAEDPQT ARRAPSAFQR LYIAGPLLLA VGILLGVLIL AGLVGHWLEE YRLEQARGQV 
TEEASALRGR IEGELNASVS LVAGLSVLVG ADPDLDGERF AAIARRMMRP EFHIRNITLA 
PNNVIRYVYP LAGNVRALGL DIGEHPVQRA SLHRVMATGA PVVAGPTELV QDGEALIVRV 
PIYEDDGSYW GVASVPLELE RFYTAAGLRD VGESGLQVAL KGRDGLGEMG EVFFGEPDVF 
KRDPVTMGIV FGASSWQLAA IPQGGWQAQA SVPAWWWWAW GGGGLILAAL TGLLARQALR 
MRFLKDRLEA IMATVPDLGF VIDDRGQFRE VFGGQERRLY RDLRSLLGRR LHQVVSFELA 
ERFLESIHQA LNERRLVILD YQLDLDQIEG GGEGGPHGCQ WFEARIYPLP SGLEARPSVL 
WLAYNVTERM QALAEAERSQ EQMRHMALHD HLTGLANRAL LLDRLEKALE WARRNREAVA 
LLFIDLNHFK PINDEHGHEV GDRVLQQLAR RLTGAVREVD TVARHGGDEF VILLEGVDGR 
RAAERVAENI VASLDEPVIV NGRRFQVSLS IGIAIYPEHG VSADELQRVA DDAMYVAKAD 
RTRSTYAFGA PATGESGSTS AAAAPPPPGD PRPGEG