| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0077 |
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| Symbol | |
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| ID | 4710494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 89860 |
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| End bp | 91500 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639854535 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001001674 |
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| Protein GI | 121996887 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGGGGC GCAGACCTCA CGGGGGCGGG GTGTACGCTA GGGTTTTCCT CCCGGCCGCG
GCCCTGGTCG TGGCGTTGGT GGTCAGCGCC GCGGTGTGGA CCGAGGCGGT GGGCGACTGG
ATCGCCGAGC TGCAGACGTT CATCGCGGTG GAGCTGGGCT GGGTCTACAC CGGCGTGGTC
GCCTTCCTGC TGGGCTTCGT CCTGGTGGTG CTGCTCCGTC CCGACTTCCG CAGGCTGCGT
CTTGGGCCGC CGGACTCCTA CCCCGAGTAC AGCTATCTGT CCTGGTTCGC CATGCTGTTC
TCGGCCGGCA TGGGCATCGG CCTGCTGTTC TACAGCGTCG CCGAGCCGCT GATGCACTAC
GCCGAGCCAC CGCGGGCCGA GCCCGGTACG CCGGATGCGG CCCTGGAGGC GCTGCAGGTC
ACCTTCTTCC ACTGGGGTCT GCACCCGTGG GCGATCTATA TCACCGTTGC TTTATCGCTG
GCGTTCTTCT CCTACCGCCA CGGCCTGCCA CTGTCTCTGC GCTCGGCACT CTACCCGTTG
CTCGGGCGGC GTATCCACGG CGTCATCGGT GACGCCGTGG ATACGGCGGC GGTGGTCGGG
ACGGTGCTCG GGGTGGCGAC CTCGCTGGGG CTCGGGGTGA TGCAGGTCAA CTCCGGGCTG
GCGCGAGTCG GGTTGCTGGA AGAGTCGCTG ACGCACCAGA TCGGGCTGAT CATCGCCATC
ATGGGCGCGG CGACCCTCTC GGTGGTTAGC GGCCTGAACA ACGGCATCCG GCTGCTCTCC
CGCGCGAATC TGTTCCTCGG GGCGGCGCTG ATGCTGTTCG TGCTCATTGC CGGCCCGACC
CGGCTGGTGC TGGCTGGTTT CTTTGAATCC GTCGGTCACT ACGTGGACGG CCTCGTAGAG
CTAACCTTCC GCACCGACGC CTTTCGGAGC CCCGACTGGC AGGCCGACTG GACGCTCTTC
TACTGGGGAT GGTGGATCTC GTGGTGCCCC TTCGTGGGCA TGTTCATCGC CCGGGTGTCG
CGGGGGCGGA CCGTGGGGGA GTTCATCCTC GGTGTTCTGC TGGTGCCGAC GCTGTTCACC
TTCGTCTGGT TGACGGCATT CGGTGCTGGG GCGTTGCACC TGGAGGAGGC GGGCGCCGGC
ATCTCCGCGG TGGTCCAAGA GAGTGTGCCG CAGGCGCTCT ACGCTATGCT CGAGGCGTTG
CCCCTCGCTG CCATCACCGT GCCGCTGGCT ACGGCTGTCG TGGTGGGGTA CTTCGTGACC
TCGGCGGATT CGGGGGCGTT GGTCATGAAC GTACTGGCTT CCGGCGGTAA TCCCAATCCG
CCTCTGCTGC AGAAGATCTT CTGGAGCAGC ATGACCGGCG CCGTGGCGGC CGTGCTGTTG
ATCGCCGGTG GGCTGCAGGC GCTGCAGACC GTCACCATCG CTGCAGCATT GCCGCTGTCG
CTGATCCTGG TGCTGATGGC ATGGGGGCTG TGGACCGCCT TCCGTGCCGA TGCGCAACAG
TCCGACCTGG CGAGCCCCAT CCCCGAGCCG AAGCTCGAGC GGTTGCTCCG CTACCTGGAC
GAGCGCCGGC GGCGACGTCG CGGAGGAGCA CCTCAGGGCG ATTCGAACAG CGGCCCCGGA
AAGAGGTCGA AACGGCTATG A
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| Protein sequence | MTGRRPHGGG VYARVFLPAA ALVVALVVSA AVWTEAVGDW IAELQTFIAV ELGWVYTGVV
AFLLGFVLVV LLRPDFRRLR LGPPDSYPEY SYLSWFAMLF SAGMGIGLLF YSVAEPLMHY
AEPPRAEPGT PDAALEALQV TFFHWGLHPW AIYITVALSL AFFSYRHGLP LSLRSALYPL
LGRRIHGVIG DAVDTAAVVG TVLGVATSLG LGVMQVNSGL ARVGLLEESL THQIGLIIAI
MGAATLSVVS GLNNGIRLLS RANLFLGAAL MLFVLIAGPT RLVLAGFFES VGHYVDGLVE
LTFRTDAFRS PDWQADWTLF YWGWWISWCP FVGMFIARVS RGRTVGEFIL GVLLVPTLFT
FVWLTAFGAG ALHLEEAGAG ISAVVQESVP QALYAMLEAL PLAAITVPLA TAVVVGYFVT
SADSGALVMN VLASGGNPNP PLLQKIFWSS MTGAVAAVLL IAGGLQALQT VTIAAALPLS
LILVLMAWGL WTAFRADAQQ SDLASPIPEP KLERLLRYLD ERRRRRRGGA PQGDSNSGPG
KRSKRL
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