| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0040 |
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| Symbol | |
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| ID | 4710293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 41999 |
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| End bp | 42583 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639854498 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001001637 |
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| Protein GI | 121996850 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.949199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTCCG AGGAATCGGA TCGCGAGCTC GTGGAGCGCG TACAGGCCGG TGAAAAACAG
GCCTTTGATA TCCTCGTGCT GCGCTACCAG CAAAAGCTGG TCAAGCTCAT CTCGCGTTAC
GTGCGCGATC CGCAGGAGGC AATGGATGTG GCGCAGGAGG CCTTTATCAA GGCCTACCGG
GCGATTCCCG GGTTCCGGGG AGAGAGCAGC TTCTACACCT GGCTCTACCG GATCGGGGTT
AACACGGCCA AGAACCACCT GGTTGCGCAA GGGCGCCGGC CACCGGACTC GGACGTCGAC
GCGCAGGATG CGGAGCGTTT TGACATCGAC ACCATGCTCC GCGAGCAGGA TACGCCGGAG
GCCGAAGCCT ATCGGGACGA GGTTGAACGG ACGGTCGTTG AGGCGATCGC CGAGCTGCCC
GAGGAGCTGC GCACTGCGGT GACGCTGCGC GAACTCGAGG GTCTGAGTTA CCAGGAGATT
GCTCAGGTCA TGGAGTGCCC GGTGGGTACG GTTCGCTCGC GCATCTTCCG CGCCCGAGAG
GCGATCGACA AGCGACTGCG GCCGCTGACT GGCGAAGAGA TATAA
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| Protein sequence | MSSEESDREL VERVQAGEKQ AFDILVLRYQ QKLVKLISRY VRDPQEAMDV AQEAFIKAYR
AIPGFRGESS FYTWLYRIGV NTAKNHLVAQ GRRPPDSDVD AQDAERFDID TMLREQDTPE
AEAYRDEVER TVVEAIAELP EELRTAVTLR ELEGLSYQEI AQVMECPVGT VRSRIFRARE
AIDKRLRPLT GEEI
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