Gene Hhal_0039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_0039 
Symbol 
ID4710292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand- 
Start bp41289 
End bp41969 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content71% 
IMG OID639854497 
Productanti sigma-E protein, RseA 
Protein accessionYP_001001636 
Protein GI121996849 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGAAG AACAACATCG GGATCGACTC GCCGAACAGC TCTCCGCGCT GGTCGATGAC 
GAGCTGCCGC GCGAGCAGCG GGCGTTCCTG ATGCGGCGCC TGGACCACGA TGCCGAGGCC 
CGTGGGCGGC TGGCCCGCTA CTTCCTGATG CGCGATGCGT TGCAGCGCAA TCTTCCGCCT 
CAGCCGAGCA CCGATCTGGT CGAGCGGGTG CGCGCGGAGT TGGCCAGTGA GCCGGCCTAC 
GACGCGCGCC GGGACGCGGC GCGCCAAGCT GCTTCCAGAG ACTGGCGCCG ACCGGCCTTC 
GGCGGGCTGA TCGCGGCCAG TGTCGCAGCG ATGACGGTAT TCTGGTGGCA GGGCGGTGCG 
CCCCCGGGGG CGGGGACCGA GCCCACGGCC GGTGGCGGGG AGCCGTCGAC CGAGGTGGCT 
GAGTCGCCGG CGGGGGGCGA GCGCGCCGTG GGCGGTACGA CAGTCCGTCC GGTGACCCTG 
GGCGACAGCG GCGGGTTGCC CTGGCCGGGC ACCGATCGGG CTACTGCCGG CACCTCAGGC 
GAATCCGCTG TGGAGCCGGT GCCCGATGCC ATGCCCTCGC GGCTGCACCG TTTCATGATC 
GATCACGCCG AGCAGGCCGA GTCCGATTAT CCCGGTAGCA TGCTTCATCA GGTACGGGTA 
CCGCAGCATG GGGATCCCTG A
 
Protein sequence
MSEEQHRDRL AEQLSALVDD ELPREQRAFL MRRLDHDAEA RGRLARYFLM RDALQRNLPP 
QPSTDLVERV RAELASEPAY DARRDAARQA ASRDWRRPAF GGLIAASVAA MTVFWWQGGA 
PPGAGTEPTA GGGEPSTEVA ESPAGGERAV GGTTVRPVTL GDSGGLPWPG TDRATAGTSG 
ESAVEPVPDA MPSRLHRFMI DHAEQAESDY PGSMLHQVRV PQHGDP