Gene Hhal_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_0004 
Symbol 
ID4710075 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp3787 
End bp4653 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content67% 
IMG OID639854460 
Productaminotransferase, class IV 
Protein accessionYP_001001601 
Protein GI121996814 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR03461] aminodeoxychorismate lyase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000202983 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGCCGTA AGCAACTGGT CAACGGCCGC GCGGATACGG CCCTCGACGC CGAGGATCGC 
GGCCTCGCCT ATGGCGATGG ACTGTTCGAG ACCGTAGCGG TCAGCCGCGG TCGGCTATGC
CTCTGGGACT ACCACATGGA TCGGCTCCTA GACGGCGCGC GCCGACTCGG GCTGCCCGAG
CCGCCCTTGG CCACCCTGCG GGAAGAGGCC CGTTTCCTCA CCGAGAAGGT GGAGCGGGGC
GTACTGAAGG TGGTCTACAC CCGCGGCAGC AGTGAGGGTC GTGGCTACCT GCCGCCTGCC
AGGCCAATCC CCACGCGAAT CCTGACACTG CACAATACTC CGGCGATTCC GCCGGAGCGC
TGGCAGGGGG TTGATGTCCG GCTCTGTCGG ACCCGCATCA GCACGCAACC CCGGCTGGCC
GGCATCAAGC ATCTCAATCG CCTGGAGCAG GTGATGGCCC GATCCGAATG GCGGGATGCC
GCCATCGCCG AGGGCTTGAT GCTCGACGCC GACGGGCTCA TCGTGGAAGG CACAGCGACC
AACCTCTTCG GAATCCGCAA TCGGGTGCTC ATGACGCCCC CTCTCACACA TTCAGGCGTG
GCCGGTGTGA TGCGGCGCTG GGTCCTGGAG TACGCCGAGA CGCTCGGGCT GCGGGTCGAG
CAGCGTGGCT TCTACCCGGG CGAGGTGTCC GAGATGGACG AGCTTTTTCT GACCAACAGC
CTGATCGGCC TCTGGCCCGT CCGTTCCGTG GCGGGTACGC AGATACCGGT CGGACCGGTG
AGTCAGCGCT ATCTCCAGGC AATCGCCGAT CATGGGCTCA CCCCGTTGGT TGAGGAGCCG
GCGATGCGCG GCGGGGCAGG GCGTTGA
 
Protein sequence
MSRKQLVNGR ADTALDAEDR GLAYGDGLFE TVAVSRGRLC LWDYHMDRLL DGARRLGLPE 
PPLATLREEA RFLTEKVERG VLKVVYTRGS SEGRGYLPPA RPIPTRILTL HNTPAIPPER
WQGVDVRLCR TRISTQPRLA GIKHLNRLEQ VMARSEWRDA AIAEGLMLDA DGLIVEGTAT
NLFGIRNRVL MTPPLTHSGV AGVMRRWVLE YAETLGLRVE QRGFYPGEVS EMDELFLTNS
LIGLWPVRSV AGTQIPVGPV SQRYLQAIAD HGLTPLVEEP AMRGGAGR