Gene CJJ81176_1019 details

Gene Information

• Locus tag: CJJ81176_1019
• Symbol: rpoD
• ID: 4683196
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter jejuni subsp. jejuni 81-176
• Kingdom: Bacteria
• Replicon accession: NC_008787
• Strand: +
• Start bp: 937862
• End bp: 939730
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 639853745
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_001000680
• Protein GI: 121612947
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0406666
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGCCA AAACTCAAGA AGCTGAATTA GAAGAATTAT TTCAAGAAAA TGCAAAAGAT 
TATATTACAT ATGAAAAATT GGTAAAATAT CTTACAAAAC AACCAAGTGC ATCAACCGCT 
AAAAAAGTAC AAGCATTAAT GAAAAAACAC AAAGTGCAAC TTTTTTCAGC AGCCGAAATT 
GCACAAATGA AAAACATAGA AGATGCAAAA AGACTTCAAG AAGAAAAACA AAAACTCCAA 
GATACAAGCC TTGAGAACGA ATTTGATTTA GCCAATGAAA ACGATTTATT AGAATGGAGC 
AGATCAGACT CTCCTGTTCG TATGTATTTA AGAGAAATGG GACAAATTGC TTTATTAAAC 
AAAGATGAAG AAATTGAAAT TTCCAAAAAA ATAGAACTTG GCGAAGATAT TATCATTGAT 
GCTTTTTGTT CTGTACCTTA TTTGATAGAT TTTATTTTAG ATTATAAAGA ACCTTTAATA 
AACAGAGAAA GAAGAGTAAA AGAACTATTT AAAAGCTTTG ACGATGAAGA AAAAAGTGAT 
GATAAACTTG ATGAACTTGA TATAGATGAA GATGAAGAAA ACGAAACAGA ATTAGAATCA 
GATGAAGAAA ATACTAAAAA AAACAGCAAA AAAGAAGATG AAAGAACTTT AAAAGTTATA 
GAAAAATTTA AAGCTCTAGA AAAAGCTAAA AAAGATTGGC TAAAAACATC CAAAGACAAA 
GAAAGCGGAG ATGAACTTTT AGATAAATTA AGCATTGCGT TCAAAAAAAA TATTTTAAAA 
GAAAAATTAA TGGATCTAGG CCCTACTTCA AAACTTATTA GTGAAATCGT AAAATCAATG 
GAAACTGCAC TAAAAAGCGA TGAAGAATTT GACAAAGAAC TTAAGCGTTT AGAATACCGC 
TTACCTATGT TTTCTGATGA ACTTAAAAAA CGCCATGCAG ATATTTTAAA AGATATTACA 
AAATTGAGCA AAGAAGAAAT CACAGAGCGG GCTTTAGAAA CAACCATGGT AAGCACTTAT 
ATGGAAATTA AAAAACTATT TCAAACCAAA GAAGCTAGTG AAAAAAGCTT TGATCTTGAA 
AAATCACGTT TAAAGGAAAT TTTAGAGCAA ATTAAACGCG GTAAAAAAAT CTCTGATGAA 
GCAAAAGGAA GAATGGCAAA ATCAAACTTG CGTCTTGTTG TAAGCATAGC TAAACGCTAC 
ACAAATCGTG GTCTACCTTT CTTAGATCTT ATCCAAGAAG GAAATATAGG TTTAATGAAA 
GCTGTGGATA AGTTTGAATA CAAAAGGGGT TATAAATTTT CCACTTATGC AACTTGGTGG 
ATCAGACAAG CTATTTCAAG GGCTATAGCC GATCAAGCAA GAACCATAAG AATTCCAATC 
CACATGATAG AAACCATCAA TCAAATTAAC AAAATTATCC GCGAACATCT ACAAAAAGAT 
GGAAAAGAAC CTGATGTCAG TGTTATAGCT AAAGAAGTAG GTTTAAGCGT AGATAAGGTT 
AAACAAGTCA TTAAAATCAC AAAAGAACCA ATTTCCCTTG AAGCTCCAAT AGGAAATGAA 
GATGATGGTA AATTTGGAGA TTTTGTTGAA GATAGAAATT CACTTTCTCC AATGGATCAT 
ATCTTAAAGG ATGATTTAAA AGAACAAATT GATGAAGTTT TAGATCAATT AAACGATAGA 
GAAAAAGCGG TAATTCGTAT GCGTTTTGGT TTAATGGATG ATGAAAGTGA TAGAACTTTA 
GAGGAAATTG GAAAAGAGCT TAATGTCACT CGAGAAAGAG TGAGACAAAT AGAAAGCTCA 
GCTATAAAAA AACTCAAACA CCCTAAAGTA GGAAGAAAAC TAAAAAATTA TATAGAAGGT 
TGGAAGTAA 

 

Protein sequence

MNAKTQEAEL EELFQENAKD YITYEKLVKY LTKQPSASTA KKVQALMKKH KVQLFSAAEI 
AQMKNIEDAK RLQEEKQKLQ DTSLENEFDL ANENDLLEWS RSDSPVRMYL REMGQIALLN 
KDEEIEISKK IELGEDIIID AFCSVPYLID FILDYKEPLI NRERRVKELF KSFDDEEKSD 
DKLDELDIDE DEENETELES DEENTKKNSK KEDERTLKVI EKFKALEKAK KDWLKTSKDK 
ESGDELLDKL SIAFKKNILK EKLMDLGPTS KLISEIVKSM ETALKSDEEF DKELKRLEYR 
LPMFSDELKK RHADILKDIT KLSKEEITER ALETTMVSTY MEIKKLFQTK EASEKSFDLE 
KSRLKEILEQ IKRGKKISDE AKGRMAKSNL RLVVSIAKRY TNRGLPFLDL IQEGNIGLMK 
AVDKFEYKRG YKFSTYATWW IRQAISRAIA DQARTIRIPI HMIETINQIN KIIREHLQKD 
GKEPDVSVIA KEVGLSVDKV KQVIKITKEP ISLEAPIGNE DDGKFGDFVE DRNSLSPMDH 
ILKDDLKEQI DEVLDQLNDR EKAVIRMRFG LMDDESDRTL EEIGKELNVT RERVRQIESS 
AIKKLKHPKV GRKLKNYIEG WK