| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CJJ81176_0785 |
|---|
| Symbol | speA |
|---|
| ID | 4682228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter jejuni subsp. jejuni 81-176 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008787 |
|---|
| Strand | - |
|---|
| Start bp | 714901 |
|---|
| End bp | 716733 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 639853508 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_001000453 |
|---|
| Protein GI | 121613374 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00102058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTATG GTATTGATAT TTGGGGAAAT GAAAATTTTA TTATCAAAAA TGGTAAAGTT
TGTATCAATC ACGAAAAAAA GCCCGCTATT ATTGATATAG TTAAAGAATT AAGAGATGAT
GGATACAAGG GGCCTTTACT TTTAAGATTT CCTCATCTTA TCCAAAAACA AATTGAAAAT
ATTTACGGAA ATTTCAATAA AGCAAGAAAG GAATTTGGCT ATAAAGGAGG ATTTAACGCT
GTTTATCCTT TAAAGGTAAA TCAATACCCT GGTTTTGTAA AAAATCTTGT AAAGCTTGGA
AAAGACTATA ACTACGGACT TGAAGCAGGC TCTAAAGCAG AGCTTTTACT CGCTATGGCT
TATAATAATG AAGGTGCACC TATTACAGTA AATGGCTTTA AAGATAGAGA ACTTATCAAT
ATAGGCTTTA TCGCAGCTGA AATGGGACAT AATATCACTT TAACCATAGA AGGACTTAAT
GAACTTGAAG CTATCATAGA CATAGCCAAA GAACGCTTTA AACCTAAACC AAATATAGGC
TTACGCGTGC GTTTGCATTC TGCTGGAGTT GGAATTTGGG CAAAAAGTGG TGGGATTAAT
TCTAAATTTG GACTTACATC CACTGAACTT ATAGAAGCGG TAAATTTACT CAAAGAAAAC
AAACTTTTAG AACAATTTAC CATGATTCAC TTTCATCTAG GCTCACAAAT TACCGAGATT
CATCCCTTGA AAAAAGCCTT AAATGAAGCA GGAAATATTT ACACAGAACT TAGAAAAATG
GGGGCTAAAA ATCTAAAAGC TATCAATCTT GGTGGCGGTT TAGCTGTGGA ATACTCACAA
TTTAAAAATG AAAAAAGTAG AAATTACACC CTAAGAGAAT ACGCTAACGA TGTAGTTTTT
ATCCTAAAAA ACATAGCCGA ACAAAAAAAA GATTTAGAGC CTGATATTTT CATAGAAAGT
GGACGTTTTG TAGCAGCCAA TCACGCTGTT TTAATCGCTC CTGTATTAGA ACTTTTTTCT
CAAGAATACG CAGAAAACAA ACTCATACTT AAAAAACAAA ATCCAAAACT TATCGATGAG
CTTTACGATC TTTATAAAAG CATAAAACCT TCCAATGCTT TAGAATACTT GCACGATAGC
ATAGATCATT TAGAGAGTAT TTTAACTCTT TTTGATTTGG GCTATGTGGA TTTGCAAGAT
CGTTCCAATG CTGAAATTTT AACTCATTTG ATTACAAAAA AAGCTATCTT GCTTTTAGGC
GATAAGCAAA ATCCTGCGGA TTTACTTGCC ATACAAGATG AAGTGCAAGA AAGGTATTTG
GTAAATTTTT CGCTCTTTCA AAGCATACCT GATTTTTGGG GCTTAGAACA AAATTTCCCC
ATCATGCCAC TTGATCGCTT AGATGAAGAA CCGACTCGAA GTGCGAGCAT TTGGGATATA
ACCTGCGATA GCGATGGAGA AATTTCATAC TCTAAAGATC AACCTTTATT TTTACACGAT
GTAGATGTAG AAAAAGAAAA TTATTTTCTA GGGTTTTTTC TTGTAGGTGC CTATCAAGAA
GTACTTGGAA TGAAACACAA TCTTTTTACT CATCCCACTG AAGCTATTAT AAGTATCAAT
GAAAAAGGCT ATGAAGTTGA GGGGATTATA GAAGCACAAT CCATACTTGA TGCCTTAGAA
GATTTAGACT ATGATATACA CGCTATCATG GATATACTTA ATGAACGCAT AAGTAATTCT
AAGCTTGTAA ATGACAAGCA AAAAAAGCAT ATTTTAGGGG AACTTTATCT TTTCTTAAAT
GATAATGGTT ATTTAAAAAG CATAGGAGTT TAG
|
|---|
| Protein sequence | MDYGIDIWGN ENFIIKNGKV CINHEKKPAI IDIVKELRDD GYKGPLLLRF PHLIQKQIEN
IYGNFNKARK EFGYKGGFNA VYPLKVNQYP GFVKNLVKLG KDYNYGLEAG SKAELLLAMA
YNNEGAPITV NGFKDRELIN IGFIAAEMGH NITLTIEGLN ELEAIIDIAK ERFKPKPNIG
LRVRLHSAGV GIWAKSGGIN SKFGLTSTEL IEAVNLLKEN KLLEQFTMIH FHLGSQITEI
HPLKKALNEA GNIYTELRKM GAKNLKAINL GGGLAVEYSQ FKNEKSRNYT LREYANDVVF
ILKNIAEQKK DLEPDIFIES GRFVAANHAV LIAPVLELFS QEYAENKLIL KKQNPKLIDE
LYDLYKSIKP SNALEYLHDS IDHLESILTL FDLGYVDLQD RSNAEILTHL ITKKAILLLG
DKQNPADLLA IQDEVQERYL VNFSLFQSIP DFWGLEQNFP IMPLDRLDEE PTRSASIWDI
TCDSDGEISY SKDQPLFLHD VDVEKENYFL GFFLVGAYQE VLGMKHNLFT HPTEAIISIN
EKGYEVEGII EAQSILDALE DLDYDIHAIM DILNERISNS KLVNDKQKKH ILGELYLFLN
DNGYLKSIGV
|
|---|
| |