Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CJJ81176_0510 |
Symbol | rpoC |
ID | 4683228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter jejuni subsp. jejuni 81-176 |
Kingdom | Bacteria |
Replicon accession | NC_008787 |
Strand | + |
Start bp | 444794 |
End bp | 449347 |
Gene Length | 4554 bp |
Protein Length | 1517 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 639853233 |
Product | DNA-directed RNA polymerase, beta' subunit |
Protein accession | YP_001000186 |
Protein GI | 121612351 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.619744 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAT TTAAAGTAAT AGAAATCAAA GAAGATGCAA GACCTAGGGA TTTCGAAGCG TTTCAACTAA GACTTGCAAG TCCTGAAAAA ATCAAATCAT GGTCTTATGG AGAAGTAAAA AAACCAGAAA CTATCAATTA TAGAACCTTA AAGCCTGAAA GAGATGGGCT TTTTTGCGCA AAGATTTTTG GACCTATAAG AGATTATGAA TGTCTTTGTG GTAAGTATAA AAAAATGCGT TTTAAAGGTG TTAAGTGCGA AAAATGTGGC GTTGAAGTAG CCAATTCAAA AGTGCGTCGT TCTAGAATGG GACATATCGA GCTTGTAACT CCTGTGGCTC ATATTTGGTA TGTTAATTCT CTTCCAAGTC GTATAGGAAC GCTTTTGGGT GTTAAGATGA AAGATCTTGA GCGTGTGCTT TATTATGAAG CTTATATCGT TGAAAATCCA GGCGATGCTT TCTATGATAA TGAAAGCACC AAAAAAGTAG AATATTGTGA TGTTTTAAAC GAAGAGCAAT ATCAAAATTT AATGCAACGC TATGAAAATA GTGGCTTTAA AGCAAGAATG GGTGGAGAAG TTGTTCGTGA TTTACTTGCA AATTTAGATC TTGTGGCACT TTTAAATCAG CTTAAAGAAG AAATGGCGGC TACAAATTCA GAGGCTAAGA AAAAAACCAT CATTAAACGC TTAAAAGTAG TAGAAAATTT CTTAAATTCA AATTTAAACG CCAATACTGA TAGCGATGAA GCCGTACCAA ATCGTCCTGA ATGGATGATG ATTACAAATC TTCCAGTTTT ACCGCCAGAT TTACGTCCTT TAGTGGCTTT AGATGGTGGA AAATTTGCAG TTTCTGATGT GAATGACTTA TATCGTCGTG TTATCAATAG AAATACACGT CTTAAAAAAC TTATGGAACT TGATGCACCT GAAATCATTA TAAGAAATGA AAAAAGAATG CTTCAAGAGG CTGTTGATGC ACTTTTTGAC AACGGTCGTC GTGCTAATGC TGTAAAAGGA GCAAATAAAC GCCCATTAAA ATCTTTAAGT GAAATTATCA AAGGGAAGCA AGGGCGTTTT AGACAAAACT TACTTGGTAA AAGGGTGGAT TTTTCAGGTC GTAGTGTTAT TGTTGTGGGT CCAAAACTTA GAATGGATCA ATGTGGTTTA CCTAAAAAAA TGGCTTTAGA GCTCTTTAAG CCACATCTTT TAGCTAAGCT TGAAGAAAAA GGTTATGCAA CCACAGTAAA ACAAGCTAAA AAAATGATAG AAAACAAAAC CAATGAAGTT TGGGAATGTT TAGAAGAGGT AGTAAAAGGG CATCCTGTTA TGCTAAACCG TGCGCCTACT TTACATAAAC TTTCTATTCA AGCTTTTCAT CCTGTTTTAG TGGAAGGTAA GGCTATACAA CTTCATCCTT TAGTTTGTGC AGCGTTTAAC GCAGACTTTG ATGGGGATCA AATGGCGGTG CATGTGCCAC TTTCTCAAGA GGCTATTGCA GAATGTAAAG TGCTTATGCT TTCATCAATG AATATTCTTT TGCCAGCAAG TGGTAAGTCT GTAACCGTTC CATCGCAAGA TATGGTTTTA GGAATTTATT ATCTTTCATT GGAAAAAGCA GGTGCTAAAG GTTCGCATAA AATTTGTACA GGCATTGATG AAGTAATGAT GGCACTTGAA AGCAAGTGTT TGGATATTCA TGCGAGTATA CAAACCATGG TAGATGGTAG AAAGATTACC ACTACAGCAG GAAGATTGAT TATTAAATCC ATTTTACCTG ATTTTGTGCC TGAAAATAGT TGGAATAAAG TCTTAAAGAA AAAAGACATT GCCGCGCTTG TGGATTATGT TTATAAACAA GGTGGTTTAG AGATTACAGC AAGTTTCTTG GATAGACTTA AAAATTTAGG TTTTGAGTAT GCAACTAAAG CAGGTATTTC AATTTCGATT GCAGATATTA TTGTTCCTAA TGATAAGCAA AAAGCTATCG ATGAAGCAAA AAAACAAGTA AGAGAAATTC AAAATTCTTA TAATCTTGGT TTGATTACTT CAGGGGAAAG ATACAATAAA ATCATTGATA TTTGGAAAAG TACAAATAAT GTCCTTTCAA AAGAGATGAT GAAGCTTGTA GAAAAAGATA AAGAAGGTTT TAACTCTATT TATATGATGG CAGATTCTGG TGCTAGGGGT AGTGCGGCTC AAATTTCTCA GCTTGCTGCG ATGAGAGGAC TTATGACTAA ACCTGATGGT TCTATTATCG AAACTCCTAT TATTTCGAAT TTCCGTGAAG GGCTAAATGT TCTTGAATAC TTTATTTCAA CTCACGGTGC TAGAAAAGGT CTTGCAGATA CCGCTCTTAA AACAGCAAAT GCCGGTTATT TGACAAGAAA ACTTATCGAT GTTGCACAAA ATGTAAAAAT TACCATTGAA GATTGTGGAA CGCATGAGGG TGTTGAAATC AATGAAATTA CCGCAGATAG CTCTATTATA GAAACTTTAG AAGAAAGAAT TTTAGGCAGG GTTTTAGCTG AAGATGTGAT TGATCCTATT ACAAATTCTG TGCTTTTTGC AGAAGGTACT TTAATGGATG AGGAAAAAGC AAAAATTCTT GGAGAAAGCG GTATAAAAAG TGTCAATATC CGCACTCCTA TTACCTGCAA AGCTAAAAAA GGAATTTGTG CAAAATGTTA TGGCATCAAT CTTGGTGAAG GTAAATTGGT AAAACCAGGC GAAGCAGTAG GAATTGTTTC CGCTCAATCT ATCGGTGAAC CAGGAACGCA GCTAACTCTA AGAACTTTCC ACAGTGGGGG AACTGCAAGT ACGGATTTAC AAGATAGACA AGTAAGTGCA CAAAAAGAAG GTTTTATCAG ATTTTATAAT CTTAAAACTT ATAAAAACAA AGAAGGTAAA AATATCGTAG CAAATCGTAG AAATGCGGCG ATTTTACTTG TGGAGCCAAA AATCAAAACT CCATTTAAAG GTGTGATTAA TATAGAAAAT ATTCATGAAG ATGTGATTGT TTCTATTAAA GATAAAAAAC AAGAAGTAAA ATACATACTA AGAAAATACG ATCTTGCTAA ACCAAATGAA TTAGCAGGTG TAAGTGGCAG TATAGATGGA AAACTTTATT TGCCATATCA AAGCGGTATG CAAGTAGAAG AAAATGAAAG TATCGTAGAA GTGATTAAAG AGGGTTGGAA TGTACTAAAT CGTATCCCTT TTGCAAGTGA AATTTTAGTA GAAGATGGTG AGCCTGTAGT TCAAAATATC AAAGCAGGCG AAAAAGGAAC GCTTAAATTT TATATCCTTA AAGGCGATGG TTTAGATAGA GTAAAAAATG TTAAAAAAGG CGATATTGTT AAAGAAAAAG GATTCTTTGT AGTGATTGCT GATGAAAATG ATAGAGAAGC AAAAAGACAC TATATTCCAA GAGAATCTAA GATAGAATTT AACGATAGTG AAAAAATCGA TGATGCAAAT ACTATCATTG CAAGTGCTCC TAAAAAAGAA AGAAAAGTGA TTGCAGAATG GGATGCTTAT AATAATACTA TCATTGCAGA AATTGATGGT GTTGTAAGCT TTGAGGATAT TGAAGCAGGT TATAGTGCCG ATGAGCAAAT TGATGAAGCT ACAGGCAAGC GTTCTTTAGT GATTAATGAG TATTTGCCAA GCGGAGTTAG ACCAACTTTG GTAATCGCAG GAAAAGGTGA TAAGGCTGTG CGTTATCAGC TTGAACCAAA AACCGTTATT TTTGTTCATG ATGGTGATAA AATCGCTCAA GCAGATATTT TAGCAAAAAC TCCAAAAGCT GCAGCTAAAT CAAAAGATAT TACAGGAGGT CTTCCAAGAG TTTCTGAACT TTTTGAAGCA AGAAAACCAA AAAATGCGGC TGTGATTGCA GAAATTGATG GTGTTGTTCG TTTTGATAAA CCTTTGCGTT CTAAAGAAAG AATTATTATC CAAGCAGAAG ATGGAACAAG CGCTGAGTAT TTAATCGATA AATCAAAACA CATTCAAGTA AGAGATGGCG AGTTTATCCA TGCAGGTGAA AAACTTACAG ATGGAGTTGT TTCAAGTCAT GATGTGCTTA AAATTTTAGG TGAAAAAGCC TTGCATTATT ATTTGATTTC TGAAATTCAA CAAGTTTATC GCGGACAAGG TGTTGTGATT TCTGATAAAC ATATAGAAGT TATCGTTTCT CAAATGCTAA GACAAGTAAA AGTTGTAGAT AGTGGACATA CGAAATTTAT CGAGGGTGAT TTGGTTTCAA GACGTAAATT CCGTGAAGAA AACGAAAGAA TCATTAGAAT GGGTGGAGAA CCTGCTATTG CTGAGCCTGT GCTTTTAGGT GTAACAAGAG CAGCGATTGG AAGTGATAGT GTGATTTCTG CGGCTTCATT CCAAGAAACT ACTAAAGTTC TAACCGAAGC AAGTATAGCG GGTAAATTTG ACTACTTAGA AGATTTAAAA GAAAATGTTA TTCTAGGTAG AATGATTCCT GTTGGAACAG GGCTTTATGG CGAACAAAAT TTAAAACTTA AAGAACAAGA ATAA
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Protein sequence | MSKFKVIEIK EDARPRDFEA FQLRLASPEK IKSWSYGEVK KPETINYRTL KPERDGLFCA KIFGPIRDYE CLCGKYKKMR FKGVKCEKCG VEVANSKVRR SRMGHIELVT PVAHIWYVNS LPSRIGTLLG VKMKDLERVL YYEAYIVENP GDAFYDNEST KKVEYCDVLN EEQYQNLMQR YENSGFKARM GGEVVRDLLA NLDLVALLNQ LKEEMAATNS EAKKKTIIKR LKVVENFLNS NLNANTDSDE AVPNRPEWMM ITNLPVLPPD LRPLVALDGG KFAVSDVNDL YRRVINRNTR LKKLMELDAP EIIIRNEKRM LQEAVDALFD NGRRANAVKG ANKRPLKSLS EIIKGKQGRF RQNLLGKRVD FSGRSVIVVG PKLRMDQCGL PKKMALELFK PHLLAKLEEK GYATTVKQAK KMIENKTNEV WECLEEVVKG HPVMLNRAPT LHKLSIQAFH PVLVEGKAIQ LHPLVCAAFN ADFDGDQMAV HVPLSQEAIA ECKVLMLSSM NILLPASGKS VTVPSQDMVL GIYYLSLEKA GAKGSHKICT GIDEVMMALE SKCLDIHASI QTMVDGRKIT TTAGRLIIKS ILPDFVPENS WNKVLKKKDI AALVDYVYKQ GGLEITASFL DRLKNLGFEY ATKAGISISI ADIIVPNDKQ KAIDEAKKQV REIQNSYNLG LITSGERYNK IIDIWKSTNN VLSKEMMKLV EKDKEGFNSI YMMADSGARG SAAQISQLAA MRGLMTKPDG SIIETPIISN FREGLNVLEY FISTHGARKG LADTALKTAN AGYLTRKLID VAQNVKITIE DCGTHEGVEI NEITADSSII ETLEERILGR VLAEDVIDPI TNSVLFAEGT LMDEEKAKIL GESGIKSVNI RTPITCKAKK GICAKCYGIN LGEGKLVKPG EAVGIVSAQS IGEPGTQLTL RTFHSGGTAS TDLQDRQVSA QKEGFIRFYN LKTYKNKEGK NIVANRRNAA ILLVEPKIKT PFKGVINIEN IHEDVIVSIK DKKQEVKYIL RKYDLAKPNE LAGVSGSIDG KLYLPYQSGM QVEENESIVE VIKEGWNVLN RIPFASEILV EDGEPVVQNI KAGEKGTLKF YILKGDGLDR VKNVKKGDIV KEKGFFVVIA DENDREAKRH YIPRESKIEF NDSEKIDDAN TIIASAPKKE RKVIAEWDAY NNTIIAEIDG VVSFEDIEAG YSADEQIDEA TGKRSLVINE YLPSGVRPTL VIAGKGDKAV RYQLEPKTVI FVHDGDKIAQ ADILAKTPKA AAKSKDITGG LPRVSELFEA RKPKNAAVIA EIDGVVRFDK PLRSKERIII QAEDGTSAEY LIDKSKHIQV RDGEFIHAGE KLTDGVVSSH DVLKILGEKA LHYYLISEIQ QVYRGQGVVI SDKHIEVIVS QMLRQVKVVD SGHTKFIEGD LVSRRKFREE NERIIRMGGE PAIAEPVLLG VTRAAIGSDS VISAASFQET TKVLTEASIA GKFDYLEDLK ENVILGRMIP VGTGLYGEQN LKLKEQE
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