Gene CJJ81176_0510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCJJ81176_0510 
SymbolrpoC 
ID4683228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCampylobacter jejuni subsp. jejuni 81-176 
KingdomBacteria 
Replicon accessionNC_008787 
Strand
Start bp444794 
End bp449347 
Gene Length4554 bp 
Protein Length1517 aa 
Translation table11 
GC content35% 
IMG OID639853233 
ProductDNA-directed RNA polymerase, beta' subunit 
Protein accessionYP_001000186 
Protein GI121612351 
COG category[K] Transcription 
COG ID[COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit 
TIGRFAM ID[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.619744 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAAT TTAAAGTAAT AGAAATCAAA GAAGATGCAA GACCTAGGGA TTTCGAAGCG 
TTTCAACTAA GACTTGCAAG TCCTGAAAAA ATCAAATCAT GGTCTTATGG AGAAGTAAAA
AAACCAGAAA CTATCAATTA TAGAACCTTA AAGCCTGAAA GAGATGGGCT TTTTTGCGCA
AAGATTTTTG GACCTATAAG AGATTATGAA TGTCTTTGTG GTAAGTATAA AAAAATGCGT
TTTAAAGGTG TTAAGTGCGA AAAATGTGGC GTTGAAGTAG CCAATTCAAA AGTGCGTCGT
TCTAGAATGG GACATATCGA GCTTGTAACT CCTGTGGCTC ATATTTGGTA TGTTAATTCT
CTTCCAAGTC GTATAGGAAC GCTTTTGGGT GTTAAGATGA AAGATCTTGA GCGTGTGCTT
TATTATGAAG CTTATATCGT TGAAAATCCA GGCGATGCTT TCTATGATAA TGAAAGCACC
AAAAAAGTAG AATATTGTGA TGTTTTAAAC GAAGAGCAAT ATCAAAATTT AATGCAACGC
TATGAAAATA GTGGCTTTAA AGCAAGAATG GGTGGAGAAG TTGTTCGTGA TTTACTTGCA
AATTTAGATC TTGTGGCACT TTTAAATCAG CTTAAAGAAG AAATGGCGGC TACAAATTCA
GAGGCTAAGA AAAAAACCAT CATTAAACGC TTAAAAGTAG TAGAAAATTT CTTAAATTCA
AATTTAAACG CCAATACTGA TAGCGATGAA GCCGTACCAA ATCGTCCTGA ATGGATGATG
ATTACAAATC TTCCAGTTTT ACCGCCAGAT TTACGTCCTT TAGTGGCTTT AGATGGTGGA
AAATTTGCAG TTTCTGATGT GAATGACTTA TATCGTCGTG TTATCAATAG AAATACACGT
CTTAAAAAAC TTATGGAACT TGATGCACCT GAAATCATTA TAAGAAATGA AAAAAGAATG
CTTCAAGAGG CTGTTGATGC ACTTTTTGAC AACGGTCGTC GTGCTAATGC TGTAAAAGGA
GCAAATAAAC GCCCATTAAA ATCTTTAAGT GAAATTATCA AAGGGAAGCA AGGGCGTTTT
AGACAAAACT TACTTGGTAA AAGGGTGGAT TTTTCAGGTC GTAGTGTTAT TGTTGTGGGT
CCAAAACTTA GAATGGATCA ATGTGGTTTA CCTAAAAAAA TGGCTTTAGA GCTCTTTAAG
CCACATCTTT TAGCTAAGCT TGAAGAAAAA GGTTATGCAA CCACAGTAAA ACAAGCTAAA
AAAATGATAG AAAACAAAAC CAATGAAGTT TGGGAATGTT TAGAAGAGGT AGTAAAAGGG
CATCCTGTTA TGCTAAACCG TGCGCCTACT TTACATAAAC TTTCTATTCA AGCTTTTCAT
CCTGTTTTAG TGGAAGGTAA GGCTATACAA CTTCATCCTT TAGTTTGTGC AGCGTTTAAC
GCAGACTTTG ATGGGGATCA AATGGCGGTG CATGTGCCAC TTTCTCAAGA GGCTATTGCA
GAATGTAAAG TGCTTATGCT TTCATCAATG AATATTCTTT TGCCAGCAAG TGGTAAGTCT
GTAACCGTTC CATCGCAAGA TATGGTTTTA GGAATTTATT ATCTTTCATT GGAAAAAGCA
GGTGCTAAAG GTTCGCATAA AATTTGTACA GGCATTGATG AAGTAATGAT GGCACTTGAA
AGCAAGTGTT TGGATATTCA TGCGAGTATA CAAACCATGG TAGATGGTAG AAAGATTACC
ACTACAGCAG GAAGATTGAT TATTAAATCC ATTTTACCTG ATTTTGTGCC TGAAAATAGT
TGGAATAAAG TCTTAAAGAA AAAAGACATT GCCGCGCTTG TGGATTATGT TTATAAACAA
GGTGGTTTAG AGATTACAGC AAGTTTCTTG GATAGACTTA AAAATTTAGG TTTTGAGTAT
GCAACTAAAG CAGGTATTTC AATTTCGATT GCAGATATTA TTGTTCCTAA TGATAAGCAA
AAAGCTATCG ATGAAGCAAA AAAACAAGTA AGAGAAATTC AAAATTCTTA TAATCTTGGT
TTGATTACTT CAGGGGAAAG ATACAATAAA ATCATTGATA TTTGGAAAAG TACAAATAAT
GTCCTTTCAA AAGAGATGAT GAAGCTTGTA GAAAAAGATA AAGAAGGTTT TAACTCTATT
TATATGATGG CAGATTCTGG TGCTAGGGGT AGTGCGGCTC AAATTTCTCA GCTTGCTGCG
ATGAGAGGAC TTATGACTAA ACCTGATGGT TCTATTATCG AAACTCCTAT TATTTCGAAT
TTCCGTGAAG GGCTAAATGT TCTTGAATAC TTTATTTCAA CTCACGGTGC TAGAAAAGGT
CTTGCAGATA CCGCTCTTAA AACAGCAAAT GCCGGTTATT TGACAAGAAA ACTTATCGAT
GTTGCACAAA ATGTAAAAAT TACCATTGAA GATTGTGGAA CGCATGAGGG TGTTGAAATC
AATGAAATTA CCGCAGATAG CTCTATTATA GAAACTTTAG AAGAAAGAAT TTTAGGCAGG
GTTTTAGCTG AAGATGTGAT TGATCCTATT ACAAATTCTG TGCTTTTTGC AGAAGGTACT
TTAATGGATG AGGAAAAAGC AAAAATTCTT GGAGAAAGCG GTATAAAAAG TGTCAATATC
CGCACTCCTA TTACCTGCAA AGCTAAAAAA GGAATTTGTG CAAAATGTTA TGGCATCAAT
CTTGGTGAAG GTAAATTGGT AAAACCAGGC GAAGCAGTAG GAATTGTTTC CGCTCAATCT
ATCGGTGAAC CAGGAACGCA GCTAACTCTA AGAACTTTCC ACAGTGGGGG AACTGCAAGT
ACGGATTTAC AAGATAGACA AGTAAGTGCA CAAAAAGAAG GTTTTATCAG ATTTTATAAT
CTTAAAACTT ATAAAAACAA AGAAGGTAAA AATATCGTAG CAAATCGTAG AAATGCGGCG
ATTTTACTTG TGGAGCCAAA AATCAAAACT CCATTTAAAG GTGTGATTAA TATAGAAAAT
ATTCATGAAG ATGTGATTGT TTCTATTAAA GATAAAAAAC AAGAAGTAAA ATACATACTA
AGAAAATACG ATCTTGCTAA ACCAAATGAA TTAGCAGGTG TAAGTGGCAG TATAGATGGA
AAACTTTATT TGCCATATCA AAGCGGTATG CAAGTAGAAG AAAATGAAAG TATCGTAGAA
GTGATTAAAG AGGGTTGGAA TGTACTAAAT CGTATCCCTT TTGCAAGTGA AATTTTAGTA
GAAGATGGTG AGCCTGTAGT TCAAAATATC AAAGCAGGCG AAAAAGGAAC GCTTAAATTT
TATATCCTTA AAGGCGATGG TTTAGATAGA GTAAAAAATG TTAAAAAAGG CGATATTGTT
AAAGAAAAAG GATTCTTTGT AGTGATTGCT GATGAAAATG ATAGAGAAGC AAAAAGACAC
TATATTCCAA GAGAATCTAA GATAGAATTT AACGATAGTG AAAAAATCGA TGATGCAAAT
ACTATCATTG CAAGTGCTCC TAAAAAAGAA AGAAAAGTGA TTGCAGAATG GGATGCTTAT
AATAATACTA TCATTGCAGA AATTGATGGT GTTGTAAGCT TTGAGGATAT TGAAGCAGGT
TATAGTGCCG ATGAGCAAAT TGATGAAGCT ACAGGCAAGC GTTCTTTAGT GATTAATGAG
TATTTGCCAA GCGGAGTTAG ACCAACTTTG GTAATCGCAG GAAAAGGTGA TAAGGCTGTG
CGTTATCAGC TTGAACCAAA AACCGTTATT TTTGTTCATG ATGGTGATAA AATCGCTCAA
GCAGATATTT TAGCAAAAAC TCCAAAAGCT GCAGCTAAAT CAAAAGATAT TACAGGAGGT
CTTCCAAGAG TTTCTGAACT TTTTGAAGCA AGAAAACCAA AAAATGCGGC TGTGATTGCA
GAAATTGATG GTGTTGTTCG TTTTGATAAA CCTTTGCGTT CTAAAGAAAG AATTATTATC
CAAGCAGAAG ATGGAACAAG CGCTGAGTAT TTAATCGATA AATCAAAACA CATTCAAGTA
AGAGATGGCG AGTTTATCCA TGCAGGTGAA AAACTTACAG ATGGAGTTGT TTCAAGTCAT
GATGTGCTTA AAATTTTAGG TGAAAAAGCC TTGCATTATT ATTTGATTTC TGAAATTCAA
CAAGTTTATC GCGGACAAGG TGTTGTGATT TCTGATAAAC ATATAGAAGT TATCGTTTCT
CAAATGCTAA GACAAGTAAA AGTTGTAGAT AGTGGACATA CGAAATTTAT CGAGGGTGAT
TTGGTTTCAA GACGTAAATT CCGTGAAGAA AACGAAAGAA TCATTAGAAT GGGTGGAGAA
CCTGCTATTG CTGAGCCTGT GCTTTTAGGT GTAACAAGAG CAGCGATTGG AAGTGATAGT
GTGATTTCTG CGGCTTCATT CCAAGAAACT ACTAAAGTTC TAACCGAAGC AAGTATAGCG
GGTAAATTTG ACTACTTAGA AGATTTAAAA GAAAATGTTA TTCTAGGTAG AATGATTCCT
GTTGGAACAG GGCTTTATGG CGAACAAAAT TTAAAACTTA AAGAACAAGA ATAA
 
Protein sequence
MSKFKVIEIK EDARPRDFEA FQLRLASPEK IKSWSYGEVK KPETINYRTL KPERDGLFCA 
KIFGPIRDYE CLCGKYKKMR FKGVKCEKCG VEVANSKVRR SRMGHIELVT PVAHIWYVNS
LPSRIGTLLG VKMKDLERVL YYEAYIVENP GDAFYDNEST KKVEYCDVLN EEQYQNLMQR
YENSGFKARM GGEVVRDLLA NLDLVALLNQ LKEEMAATNS EAKKKTIIKR LKVVENFLNS
NLNANTDSDE AVPNRPEWMM ITNLPVLPPD LRPLVALDGG KFAVSDVNDL YRRVINRNTR
LKKLMELDAP EIIIRNEKRM LQEAVDALFD NGRRANAVKG ANKRPLKSLS EIIKGKQGRF
RQNLLGKRVD FSGRSVIVVG PKLRMDQCGL PKKMALELFK PHLLAKLEEK GYATTVKQAK
KMIENKTNEV WECLEEVVKG HPVMLNRAPT LHKLSIQAFH PVLVEGKAIQ LHPLVCAAFN
ADFDGDQMAV HVPLSQEAIA ECKVLMLSSM NILLPASGKS VTVPSQDMVL GIYYLSLEKA
GAKGSHKICT GIDEVMMALE SKCLDIHASI QTMVDGRKIT TTAGRLIIKS ILPDFVPENS
WNKVLKKKDI AALVDYVYKQ GGLEITASFL DRLKNLGFEY ATKAGISISI ADIIVPNDKQ
KAIDEAKKQV REIQNSYNLG LITSGERYNK IIDIWKSTNN VLSKEMMKLV EKDKEGFNSI
YMMADSGARG SAAQISQLAA MRGLMTKPDG SIIETPIISN FREGLNVLEY FISTHGARKG
LADTALKTAN AGYLTRKLID VAQNVKITIE DCGTHEGVEI NEITADSSII ETLEERILGR
VLAEDVIDPI TNSVLFAEGT LMDEEKAKIL GESGIKSVNI RTPITCKAKK GICAKCYGIN
LGEGKLVKPG EAVGIVSAQS IGEPGTQLTL RTFHSGGTAS TDLQDRQVSA QKEGFIRFYN
LKTYKNKEGK NIVANRRNAA ILLVEPKIKT PFKGVINIEN IHEDVIVSIK DKKQEVKYIL
RKYDLAKPNE LAGVSGSIDG KLYLPYQSGM QVEENESIVE VIKEGWNVLN RIPFASEILV
EDGEPVVQNI KAGEKGTLKF YILKGDGLDR VKNVKKGDIV KEKGFFVVIA DENDREAKRH
YIPRESKIEF NDSEKIDDAN TIIASAPKKE RKVIAEWDAY NNTIIAEIDG VVSFEDIEAG
YSADEQIDEA TGKRSLVINE YLPSGVRPTL VIAGKGDKAV RYQLEPKTVI FVHDGDKIAQ
ADILAKTPKA AAKSKDITGG LPRVSELFEA RKPKNAAVIA EIDGVVRFDK PLRSKERIII
QAEDGTSAEY LIDKSKHIQV RDGEFIHAGE KLTDGVVSSH DVLKILGEKA LHYYLISEIQ
QVYRGQGVVI SDKHIEVIVS QMLRQVKVVD SGHTKFIEGD LVSRRKFREE NERIIRMGGE
PAIAEPVLLG VTRAAIGSDS VISAASFQET TKVLTEASIA GKFDYLEDLK ENVILGRMIP
VGTGLYGEQN LKLKEQE