| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4786 |
|---|
| Symbol | |
|---|
| ID | 4693976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 5284206 |
|---|
| End bp | 5284883 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639852526 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_999496 |
|---|
| Protein GI | 121611689 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.480444 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCA CCAACACCAC CCGCCCGCGC CGCTTCGATC TGATCGCCTT CGACTGGGAC
GGCACCCTGT ACGACTCCAC GGCCATCATC GCGCGCTGCA TACAAGCGGC GGTGCGCGAT
GTCGGCGGCA CCGTGCCCAG CGACAAAGCC GCAACCTACG TGATCGGCCT GGGGCTGATG
CAGGCCCTGG TCCACGCGGC GCCGGACGTG CCGCCCGAAA AGCACCACGA CCTGGGCCAG
CGTTACCGCT TTCACTACGC CCGGCACCAG GATGACCTGA GCCTGTTCGA CGGCGTCGCG
CCCCTGCTGG CCGACCTGCG CCAGCGCGGC CACCTGCTGG CCGTGGCCAC CGGCAAAAGC
CGGCGCGGGC TTGACGAAGC CCTGCACTCG GTGGCCCTGC GGGGAGTATT CGACGGCTCG
CGCACCGCCG ACCAGACCGC CAGCAAGCCG CACCCGCTGA TGCTGCAAGA ACTGATGGCC
GAATTCGACG TGGCGCCGCA GCGCCTGTTG CTGATCGGCG ACACCACCCA CGACCTGCAA
ATGGCCGTCA ACGCGGGCTG CGCCAGCGTG GGGGTGAGCT ACGGCGCCCA TGGGCCCGAA
GCATTCCAGA CGCTGGCCCC GTTGTTCGTC GCCCGCTCGG TGCGCGAACT GCACGATTGG
CTGCTGCAAG AAGCCTGA
|
|---|
| Protein sequence | MPATNTTRPR RFDLIAFDWD GTLYDSTAII ARCIQAAVRD VGGTVPSDKA ATYVIGLGLM
QALVHAAPDV PPEKHHDLGQ RYRFHYARHQ DDLSLFDGVA PLLADLRQRG HLLAVATGKS
RRGLDEALHS VALRGVFDGS RTADQTASKP HPLMLQELMA EFDVAPQRLL LIGDTTHDLQ
MAVNAGCASV GVSYGAHGPE AFQTLAPLFV ARSVRELHDW LLQEA
|
|---|
| |