| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4780 |
|---|
| Symbol | |
|---|
| ID | 4693988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 5277093 |
|---|
| End bp | 5278877 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639852520 |
|---|
| Product | O-antigen polymerase |
|---|
| Protein accession | YP_999490 |
|---|
| Protein GI | 121611683 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.793749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.179192 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACC CCTATCCGTC TCAGACCCAT CTTCAACCCA TGCCACGCTG GAACAGGCGG
ATGCCCGTCA ATGGAATGAC CTCCTTCAGG TCGATGCCCG CCTCCCTTTT GCATGCCTTT
GGCATTCTCG TTTTCGCCTG GGCCTGGTTG TCTTATGACC ATAACCGGCC GTGGCTCAAT
TTTCCTGCCG AATCGCTGGC GCTGCTGGGT ATTGGCCTGC TGGCCGCAAG CAGGTGGGTC
GTCCCCGACG CGCAAAGAGA CAGGGGGGGC CTCATCGTCC CGCGACTGGC TTGGGGGCTG
GTCATTTTGG CCACGCTGCC GTGGTTGCAG TGGTTTGCCG GCATATCGCT GTTTGCCGGG
GATGCCGTCA TCGTTTCCCT GTACCTGTGC GCGCTGGCCG TTGCCGTTGC ACTGGGTTAT
GCCTATGCGC GCGACGCAGC CGATGCGCTG CAGAGCCTGG CCCCGGTTTT TCTTGTCATC
GGTTTTGTGG CCCTGGTTTC TGCGGCCATT GGCCTGCTGC AATGGCTGAA TCTGCAAGAA
CCGCTGGGAA TATATGTGGT GCAGACCGAT GTCGGGGACC GCGCGATGGG CAATATGGGC
CAGCCCAATC AACTGGCCAG CCTGCTGCTG ATGGGTATTG CGGCGCTGGC CTGGACCTAT
GAGCGCAAAC GCATTGGCGC CACAGGCTTG CTCTGCGCCA CAGGATTTTT GACACTGGTC
TTGGTGCTGA CGCAATCGCG CGCCGGGATA TTGAGCGCCT TGGTCGTGGT GCCGCTGTTC
GTCTGGAAAA GCCATCGCGC CGCAACGCGC ATTCGCCCTT GGCATGCGGT CGGCTGGCTG
CTGTGCTTTC TGCTGGCCTT GCAGGCATTG CCTTGGGTTC ATGCCGCATT GCTGATGGAC
GAGGGGCGCA GTCTGAGCCT GCTGCGCGAC AACGGGCGGT TTTTTATCTG GCGGCAGGTA
TGGGGCGGCA TTCTGGAGTC GCCCTGGGTC GGGTATGGCT GGAATCAGAC CGCCACGGCG
CAGATGGCCA GCCCCCTCGA TTCGCCAGGC TCGCTGTCCC TGAGCTATGC GCACAATGTG
GTGCTCGATT TGATGGCCTG GAATGGCATT CCCGTGGGTT TGGCCCTGAC CTTGGCCGGC
ATCTACTGGT TTTTGTCGCG CATCCATGCC CTCAGGCAGG TCAATCCGCT GTACGCGATG
GCCTGCCTGC TCCCCATTGC CATCCATAGC CTGCTGGAGT ATCCGTTTGC CTATTCGTAT
TTTCTGCTGG CTGCGGGGCT GATGGCCGGG ATCGTCGAGG CCGCGTGGAA AGATGCGGCC
CCGGCCGTGA TGCCACGGCG GTTCTTTGGC GTTTTTCTCG GTGCATGGTT TGCGCTGGGT
TGCTACGCAG TCCATGAGTA CATGCAGATA GAGGAAGATT TTCGCGTCGT GCGCTTCGAG
AATCTGCGCA TTGGCAAGAC CCCTGCCGAT TACCGGCCGC CTGAGCATAT CTGGCTGCTT
TCGCAGCTGG GCAGCATGCT CGATGCGGCC CGGCAAGAGG CCAAAAGAGG CATGACTGCG
CAGGAGATGC AGAACCTGCG CAAGGTCGCG CTGCGCTTTC CTTATGGCTC GCTCACATTG
CGCTACGCGC TGGCGCTGGG GCTCAATGGC CGGCCGCAGG AGGCGAGCCG GCAAATGAAG
ATCATCCGGG GAATATACGG GCCGTATTAC TACCGCGCCG CAGTGGCTGC CCTGCGCCGC
CAAGAAGAAA AATACCCTGA ACTGCGGGAA GTGAAAACGC CATGA
|
|---|
| Protein sequence | MINPYPSQTH LQPMPRWNRR MPVNGMTSFR SMPASLLHAF GILVFAWAWL SYDHNRPWLN
FPAESLALLG IGLLAASRWV VPDAQRDRGG LIVPRLAWGL VILATLPWLQ WFAGISLFAG
DAVIVSLYLC ALAVAVALGY AYARDAADAL QSLAPVFLVI GFVALVSAAI GLLQWLNLQE
PLGIYVVQTD VGDRAMGNMG QPNQLASLLL MGIAALAWTY ERKRIGATGL LCATGFLTLV
LVLTQSRAGI LSALVVVPLF VWKSHRAATR IRPWHAVGWL LCFLLALQAL PWVHAALLMD
EGRSLSLLRD NGRFFIWRQV WGGILESPWV GYGWNQTATA QMASPLDSPG SLSLSYAHNV
VLDLMAWNGI PVGLALTLAG IYWFLSRIHA LRQVNPLYAM ACLLPIAIHS LLEYPFAYSY
FLLAAGLMAG IVEAAWKDAA PAVMPRRFFG VFLGAWFALG CYAVHEYMQI EEDFRVVRFE
NLRIGKTPAD YRPPEHIWLL SQLGSMLDAA RQEAKRGMTA QEMQNLRKVA LRFPYGSLTL
RYALALGLNG RPQEASRQMK IIRGIYGPYY YRAAVAALRR QEEKYPELRE VKTP
|
|---|
| |