| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4766 |
|---|
| Symbol | |
|---|
| ID | 4694580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | + |
|---|
| Start bp | 5260539 |
|---|
| End bp | 5261783 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639852507 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_999477 |
|---|
| Protein GI | 121611670 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.646953 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGTC TGTTCTCGCC CGCCCAATGC TGGTCTTTGG CCGACCGGTT CGCAACCCCG
CTGTGGGTGT ATGACGCAGC CACCATCGTC GAGCGCATCG CCCGGCTGTC CCGGTTCGAC
ACCATCCGCT TTGCGCAAAA AGCCTGCTCG AACATCCACA TCCTTGCGCT GATGCGCGCG
CAGGGCGTGC TGGTCGATGC GGTCTCGCGC GGCGAGATCC TGCGGGCGCT GGCCGCCGGC
TACCAGACCG GCGCCCAGCC CGCGCAGATC GTCTTCACCG CCGACCTGTT CGACGCCGCC
ACGCTGGCCT GCGTCATCGA GCATCGCGTG CCGGTGAACG CCGGCTCGAT GGACATGCTG
CACCAGCTAG GCCCGCGCTC GCCCGGCCAC GCGGTATGGC TGCGCATCAA CCCCGGCTTT
GGCCATGGCC ACAGCCACAA GACCAACACC GGCGGCGAAC ACAGCAAGCA CGGCATCTGG
CACACCGACC TGCCGGCCGC GCTCGCCGCC ATCAGGCAGC ATGGCCTGGA CCTGGTGGGC
CTGCACATGC ATATCGGCTC GGGCGTGGAC TACCGCCACC TGGCGCAGGT CTGCGACGCC
ATGGTGGCGC TGGTGCGCGG CGTGCGCGCG GCAGGGCATG ATCTGCGGGC GATATCGGCC
GGCGGCGGCC TGTCTGTCCC GTACCGCAGC GGCGACCCGG TGGTCGACAC GGCGCATTAC
CACGGCCTGT GGGAAGCGGC GCGCCAGCAG GCCCAGGCCA TCATCGGCCA CCCGCTGACG
CTGGAGATCG AGCCGGGCCG CTATTTGGTG GCCGAATCGG GCGTGCTGCT CGCTGCGGTG
TGCGCGACCA AGCAGGTGGG CAGCAACCAC TTCGTGCTGC TCGACGCGGG CTTCAATGAA
CTGCTGCGCC CCTCGATGTA CGGCAGCTAC CACGCGATGA GCCTGCTGCG GCGCGACGGC
GCCAGCGCCG CCGGGCGCCC CACCGTGGTG GCCGGCCCGC TGTGCGAAGC GGGCGACGTA
TTCACGCAAA GCGGCGACGG CCTGGTGCTG CCACGCGACC TGCCCCCCGC CGAGGTGGGC
GACCTGCTGC TCATCCATGA CACCGGGGCC TACGGCGCGA CCATGTCCTC CAACTACAAC
ACCCGCCCCC TGAGCGCCGA AGCGCTGGTC GAAGGCGCCC AGGCCCGGCT CATCCGCCGC
CGCCAGACGG TCGACGAACT GCTGGCGCTG GAACGGGGGC TTTGA
|
|---|
| Protein sequence | MSSLFSPAQC WSLADRFATP LWVYDAATIV ERIARLSRFD TIRFAQKACS NIHILALMRA
QGVLVDAVSR GEILRALAAG YQTGAQPAQI VFTADLFDAA TLACVIEHRV PVNAGSMDML
HQLGPRSPGH AVWLRINPGF GHGHSHKTNT GGEHSKHGIW HTDLPAALAA IRQHGLDLVG
LHMHIGSGVD YRHLAQVCDA MVALVRGVRA AGHDLRAISA GGGLSVPYRS GDPVVDTAHY
HGLWEAARQQ AQAIIGHPLT LEIEPGRYLV AESGVLLAAV CATKQVGSNH FVLLDAGFNE
LLRPSMYGSY HAMSLLRRDG ASAAGRPTVV AGPLCEAGDV FTQSGDGLVL PRDLPPAEVG
DLLLIHDTGA YGATMSSNYN TRPLSAEALV EGAQARLIRR RQTVDELLAL ERGL
|
|---|
| |