| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4476 |
|---|
| Symbol | |
|---|
| ID | 4693727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | + |
|---|
| Start bp | 4946890 |
|---|
| End bp | 4947831 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639852223 |
|---|
| Product | RNA polymerase, sigma 32 subunit, RpoH |
|---|
| Protein accession | YP_999195 |
|---|
| Protein GI | 121611388 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTC AATCCGGCTC CGCAACGCTG AGCCTGGCTC CCGCCAACCC TTGGACGCTG
GTGCCTGCGC TGGGCAACCT CGACGCTTAT ATTGCCGCCG TCAACCGCCT GCCCCTGCTC
ACGTATGAGC AAGAGCAAAG CTACGCGCGC CAGTTCAAGG AACACAACGA TCTGGACGCC
GCTGGCCGGC TGGTGCTGTC GCACCTGCGC CTGGTGGTGT CGATTGCGCG CCAGTACCTG
GGCTACGGCC TGCCGCACGG CGACCTGATA CAGGAAGGCA ATATCGGCCT GATGAAAGCC
GTCAAGCGCT TCGACCCCGA CCAGGGCGTG CGCCTGGTCA GCTACGCCAT GCACTGGATC
AAGGCCGAGA TCCACGAATA CATCCTGAAG AACTGGCGCA TGGTCAAGGT GGCAACCACC
AAGGCCCAGC GCAAGCTGTT CTTCAACCTG CGCTCGATGA AGCAGGGCTT CAAGGCCGAC
GCCGGCGCCA CCGATGCTGC CACCTACCGC GACACGCTGT CCGAGCACGA AATCGACGCC
GTCGCGGCGC AGCTCCATGT CAAGCGCGAA GAAGTCATCG AGATGGAAAC CCGCATGTCC
GGCGGCGATG TGCTGCTCGA CCCGGCGCCA TCGGACGATG GCGAGCAGGC CTTTGGCCCG
ATTGCCTACC TGGCCGATGC CTCGCACGAG CCGACGGCGC TGATCGAGTC GCGCCAGCGG
GATGCGCTGG CCACCGATGG CATTGCCAAG GCGCTGGCCA GCCTGGACGA GCGCAGCCGG
CGCATCGTGC AAGAGCGCTG GCTCAAGGTC AACGATGACG GAACGGGCGG CATGACGCTG
CACGATCTGG CCGCCATTTA CGGCGTGAGC GCCGAACGCA TCCGCCAGAT CGAGGTGGCG
GCCATGAAGA AGATGAAGCA GGCGCTGGTC AAATACGCCT GA
|
|---|
| Protein sequence | MTIQSGSATL SLAPANPWTL VPALGNLDAY IAAVNRLPLL TYEQEQSYAR QFKEHNDLDA
AGRLVLSHLR LVVSIARQYL GYGLPHGDLI QEGNIGLMKA VKRFDPDQGV RLVSYAMHWI
KAEIHEYILK NWRMVKVATT KAQRKLFFNL RSMKQGFKAD AGATDAATYR DTLSEHEIDA
VAAQLHVKRE EVIEMETRMS GGDVLLDPAP SDDGEQAFGP IAYLADASHE PTALIESRQR
DALATDGIAK ALASLDERSR RIVQERWLKV NDDGTGGMTL HDLAAIYGVS AERIRQIEVA
AMKKMKQALV KYA
|
|---|
| |