| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4359 |
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| Symbol | |
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| ID | 4691534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | - |
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| Start bp | 4803423 |
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| End bp | 4806947 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639852104 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_999080 |
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| Protein GI | 121611273 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.281858 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0471962 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCGCTC CGCGTCCCGG GGGGTGCGGC GAGTTCGACA CCAGCGTCTG CATGGAACTG
CCCACACTCT CCCCCGGAAA ACGATTCACC CTGGCCCGCC CTGCGGGCAG CGCCGATTCC
CTGCTGCTGG CCCGCCTGGC CGAACGCGAA CGCGCCGCCG GGCGCGCCAC GGCCATCGTG
GTGGCCGACG CCAGCGACGC GCAGCGCCTG ATCGACGAGT TCGCGTTTTT TGCCCCGGCC
CTGCGCTGCG CGCTGTTTCC CGACTGGGAA ACGCTGCCCT ATGACAGTTT CTCGCCGCAC
CAGGACCTGA TCAGCGAGCG GCTGGCGACG CTGTGGCGCA TCCGGCAGGG CCAGGCCGAT
GTGGTGCTGG TGCCGGCCAC CACGGCGCTG TACCGGCTGG CGCCGCCGGC GTTTCTGGCC
GGCTATACCT TTCACTTTGC GCTCGGGCAA AAGCTCGATG CGGCCCAATT CAAGGCCCAG
CTCACGCTGG CCGGCTACAG CCATGTATCG CAGGTGGTCA GCCCCGGCGA GTACGCAGTG
CGCGGCGGGC TGATCGACCT GTTCCCGATG GGCGCGAGCG TGCCGTACCG GGTGGACCTG
TTCGACGACG AGATCGACTC GATCCGCAGC TTCGACCCCG ACAACCAGCG CAGCCTGCAC
CCGGTGCCCG AAGTGCGCCT GCTGCCCGGG CGCGAGTTTC CGATGGACGA GGCCGCGCGC
GCCAAGTTCA GAAGCCGCTG GCGCGAACTG ATCGAGGGCG ACCCGACCAA GAGCCGCATC
TACAAGGACA TGGGCAACGG CGTGGCCACG GCCGGTATCG AGTATTACCT GCCGTTGTTC
TTTGACGACA CCGCCAGCAT GTTCGACTAC CTGGGCAGCG CCGCCATCGT GGTGCTGCAT
GGCGACCTGG AGCCGGTTTT CCAGCGCTTC TGGCAAGACA CCAAAGAGCG CTTTCGCCTG
ACCAGCGCCG ACCCTGAACG CCCCGCGCTG CCGCCCGAGG CGCTGTTTTT GTCGATCGAG
CAGTTCTACA CCCGGGCCAA TGCGTATGCG CAGTTGTCGC TGCGCCCGGG CGCGCCGGAG
CAGGCCGGGG ACGGGGCTTT TTGCCGCTTG GGCGATTTGT CCGTGCTGCG CGCCGCCGAT
GACCCGCTGG CCCGCTTGCA GGCCCATATC CGCAGCACGC CGCGCCGCGT GCTGCTGCTG
GCCGAAAGCG CTGGCCGGCG CGAGAGCCTG CTCGATTTTC TGCGCGCCGC GCAGATCGAC
CCGCCGGTGT TCGACTCGCT GGCCGCGTTC CAGGGCGCCG CCGGCGCGCC GCTGGGCATT
GCCACGGCAG CGCTGAGCGT GGGCTTTGGC GCCATCGCCG AGGGCATCGA TTTCGTCACC
GAAACCGAGC TGTTCGCCGC CGGCCCGAGC ACGCGCCGGC GCAAAAAGCA AGAGCAGGTC
AGCGATGTCG AGGCGCTGAT CAAAGACCTG GCGGAACTGA ACCTTGGCGA CCCGGTGGTG
CACAGCGCGC ATGGCATTGG CCGCTACCGG GGGCTGGTCC ATATGGACCT GGGCCAGCCG
AACCCCGACG GCACACCGGC GCTGCAGGAG TTCTTGCACC TGGAATACGC CGACCAGGCC
GTGCTGTACG TGCCCGTGAG CCAGTTGCAG CAGATCAGCC GCTACACCGG CGTAGGCGCC
GACGAGGCCC CGCTGCACAA GCTCGGCAGC GGCCAGTGGG AAAAGGCCAG GCGCAAGGCC
GCCGAGCAGG TGCGCGACAG CGCCGCCGAA CTGCTCGACA TCTACGCGCG CCGTGCCGCG
CGCGAGGGCC ATGCGTTTCG CCTGGCAACG CAGGACTACG AGGCTTTTGC CGACGAATTC
GGTTTCGAGG AAACCGCCGA CCAGCGCGCC GCGATCGAGG CCGTGATCCA GGACATGGTC
TCGCCGCGCC CGATGGACCG CCTGGTCTGC GGCGATGTCG GCTTCGGCAA AACCGAGGTG
GCGCTGCGCG CGGCCTTCGT GGCGGTCAGC GGCGGCCGGC AGGTGGCGTT CCTGGCGCCG
ACCACGCTGC TGGCCGAGCA GCATTACCAG ACCCTGCTCG ACCGCTTTGG CCCATGGCCG
GTGAAGGTGG CCGAGGTCTC GCGCTTTCGC TCGGGCAAGG AGGTCGCGGC CAGCCTGGCG
GGCATTGGCG ACGGCACGGT GGACATCGTG GTCGGCACGC ACAAGCTGCT GTCCGGCGCG
ATCCGGTTCC ACGACCTGGG CCTGTTGATC ATCGACGAGG AGCACCGCTT TGGCGTGCGC
CACAAGGAGC AGATGAAGCA GTTGCGCGCC GAGGTCGACG TGCTCACCCT CACCGCCACG
CCGATCCCGC GCACGCTGGG CATGGCGCTC GAAGGACTGC GCGACCTGAG CGTGATCGCC
ACCGCGCCGC AGCGGCGCCT GGCCATCAAG ACCTTCGTGC GCAACGAAGG CACGGGCGTG
ATCCGCGAGG CCGTGCTGCG CGAGCTCAAG CGCGGCGGGC AGGTGTACTT CCTGCACAAC
GAGGTCGAGA CCATAGAACA CCGGCGCCAA AGGCTCGAAG AAATACTGCC CGAGGCGCGC
ATCGCCGTGG CCCATGGCCA GATGCCCGAG CGCGCGCTCG AGCGCGTGAT GCGCGACTTC
GTGGCCCAGC GCTACAACCT GCTGCTGTGC TCGACCATCA TCGAGACCGG CATCGATGTG
CCCACGGCCA ACACCATCCT GATGAGCCGG GCCGACAAGT TCGGCCTGGC GCAGTTGCAC
CAGTTGCGCG GGCGCGTGGG CCGCAGCCAC CACCAGGCCT ACGCCTACCT GATGGTGCCC
GACACCGAGG GCCTGACCAG GCAGGCGGCC CAGCGGCTCG ACGCGATACA GCAGATGGAG
GAATTGGGCA GCGGCTTTTA CCTGGCGCTG CACGACCTGG AGATCCGTGG CGCGGGCCAG
GTGCTGGGCG AAAACCAGAG CGGCAACATG CTGGAGGTGG GCTTTCAGTT GTACAACGAA
ATGCTGGCCG AAGCCGTCAA GGCGCTGCGG GCCGGCAAGG AGCCCGACCT GCTCGGCCCG
TTGAGCGCGA CCACCGACAT CAACCTGCAC GCCCCGGCAT TGCTGCCCGA GCACTACTGC
GGCGACGTGC AACTGCGCCT GTCGTTCTAC AAGAAACTGG CCAGCGCGAA GACGCCCGAG
CAGATCGACG GCCTGCTCGA AGAACTCGTC GACCGCTTCG GCAAACTGCC GCCGCAGGCG
CAAACGCTGA TCGACGTGCA CCGCCTGCGC GTGCTCAGCC GGCCCTATGG CGTGGTGAAG
GTGGATGCGG CGCCGGGCGT GATCCACATC ACCTTCCGCC CCCAGCCCCC GGTGGACAGC
CTGCGCATCA TCGAACTGAT CCGCAAGAAC GCGCACATCA AACTGGTGGG CAACGAAAAG
CTGCGCATCG AGCGCGCCAC CGCGCAGCCC GCAGAACGCG CCCGGCTGGT GCGCGAGGTG
CTGCGCCAGT TCGGCGCGCC GCTCGCCGAG GTCGCGCCGC CGTGA
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| Protein sequence | MRAPRPGGCG EFDTSVCMEL PTLSPGKRFT LARPAGSADS LLLARLAERE RAAGRATAIV
VADASDAQRL IDEFAFFAPA LRCALFPDWE TLPYDSFSPH QDLISERLAT LWRIRQGQAD
VVLVPATTAL YRLAPPAFLA GYTFHFALGQ KLDAAQFKAQ LTLAGYSHVS QVVSPGEYAV
RGGLIDLFPM GASVPYRVDL FDDEIDSIRS FDPDNQRSLH PVPEVRLLPG REFPMDEAAR
AKFRSRWREL IEGDPTKSRI YKDMGNGVAT AGIEYYLPLF FDDTASMFDY LGSAAIVVLH
GDLEPVFQRF WQDTKERFRL TSADPERPAL PPEALFLSIE QFYTRANAYA QLSLRPGAPE
QAGDGAFCRL GDLSVLRAAD DPLARLQAHI RSTPRRVLLL AESAGRRESL LDFLRAAQID
PPVFDSLAAF QGAAGAPLGI ATAALSVGFG AIAEGIDFVT ETELFAAGPS TRRRKKQEQV
SDVEALIKDL AELNLGDPVV HSAHGIGRYR GLVHMDLGQP NPDGTPALQE FLHLEYADQA
VLYVPVSQLQ QISRYTGVGA DEAPLHKLGS GQWEKARRKA AEQVRDSAAE LLDIYARRAA
REGHAFRLAT QDYEAFADEF GFEETADQRA AIEAVIQDMV SPRPMDRLVC GDVGFGKTEV
ALRAAFVAVS GGRQVAFLAP TTLLAEQHYQ TLLDRFGPWP VKVAEVSRFR SGKEVAASLA
GIGDGTVDIV VGTHKLLSGA IRFHDLGLLI IDEEHRFGVR HKEQMKQLRA EVDVLTLTAT
PIPRTLGMAL EGLRDLSVIA TAPQRRLAIK TFVRNEGTGV IREAVLRELK RGGQVYFLHN
EVETIEHRRQ RLEEILPEAR IAVAHGQMPE RALERVMRDF VAQRYNLLLC STIIETGIDV
PTANTILMSR ADKFGLAQLH QLRGRVGRSH HQAYAYLMVP DTEGLTRQAA QRLDAIQQME
ELGSGFYLAL HDLEIRGAGQ VLGENQSGNM LEVGFQLYNE MLAEAVKALR AGKEPDLLGP
LSATTDINLH APALLPEHYC GDVQLRLSFY KKLASAKTPE QIDGLLEELV DRFGKLPPQA
QTLIDVHRLR VLSRPYGVVK VDAAPGVIHI TFRPQPPVDS LRIIELIRKN AHIKLVGNEK
LRIERATAQP AERARLVREV LRQFGAPLAE VAPP
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