| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4087 |
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| Symbol | secD |
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| ID | 4695326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | - |
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| Start bp | 4481477 |
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| End bp | 4483387 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639851834 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_998810 |
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| Protein GI | 121611003 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.15751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGTT ACCCGGTCTG GAAGTACACG ATCCTGGTGA TCGTGCTGCT GGTGGGGGTC
TTGTACACCC TGCCCAATTT CTTTGGCGAG GCGCCTGCGG TGCAGGTCTC GTCGGCCAAG
ACCGCCGTCG CGGTCGACGC CGCCGTGCAA CAGCGGGTGC AAGAGGCGCT CCAGGCCGCA
GGCATCACGC CCGACTTCGT GGAGTTGCAG GGCAATTCGG TGCGCGCGCG TTTCGACACG
CCCGACACCC AGCTCCAGGC CAAGGACGCG ATCGAAAAAG CCCTGGTGCC CGATGCCGGC
AATGCCTCGT ACATCGTGGC GCTGAACCTG GTTTCGCGCT CGCCGACCTG GCTCAAGGCG
CTGCACGCCA ATCCGATGTA CCTGGGCCTG GACCTGCGTG GCGGCGTGCA CTTCATGCTG
CAAGTGGACA TGCAGGCCGC GCTGACGAAA AAGGCCGAGT CCTATGCCGG CGACATCCGT
GGTTTGCTGC GCGACCAGGG CATACGCCAT GGCGGCGTCA GCCGCGAAGG CCAGAACATC
GACATCCGGG TGCGCGACGA GGCCACGCTG ACGGCCGCGC GCAACGCGAT TGCCCGGTCG
CTCACCGACC TGCAACTGAG CAGCCGGCCC GAAGACGGCG CCGACAGCGC CGGCGGCGGG
TTCAGGCTGC GCGCTTTCAT CAAGCCCGAG GCCACGCGCC TCGTGCAGGA GCAGGCGCTC
AAGCAGAACA TCGTCACGCT GCACAACCGG ATCAACGAAC TCGGCGTGGC CGAGCCCGTG
ATACAGCAGC AGGGCCAGGA TCGCATCGTG GTGCAACTGC CCGGCGTGCA GGACACGGCC
AAGGCCAAGG ACATCCTGGG CCGCACCGCG ACACTGGAAG TGCGCATGGT CGACGAAAGC
ACCGAGGCGC GCAGCGCCGC CAGCGGGCGC GTTCCGCTGC CCTTGGGGTC GGAACGCTAC
CCGGAGCGCA ACGGCCAGCC GGTGATCGTC AAAAAGCAGG TCGTCCTGAC CGGCGAGAAC
CTGACCGACG CGCAGCCCGG CTTCGATGGC CAGACCCAGG AGCCTACCGT CAACCTGACG
CTCGACGCCA AGGGCGCGCG CATCTTTCGC GATGTCACGC GCGAGAACGT GGGCAAGCGC
ATGGCCATCG TGCTGTTCGA GAAGGGCCAG GGCGAAGTGG TCACGGCCCC GGTGATCCGC
TCGGAGATCG GCGGCGGTCG CGTGCAGATC TCCGGCAGCA TGAGCACGGA CGAGGCCCAC
GACACCGCGT TGCTGCTGCG CGCCGGTTCG CTGGCAGCGC CGATGGAAAT CATCGAAGAG
TTCACCATCG GCCCGACCTT GGGCGCGGAC AACATCGAGC GCGGCATCCA CAGCGTGGTC
TGGGGTCTGG CGGCGATTGC GCTGTTCATG TGCTGTTACT ACCAGTTGTT TGGCCTGTTC
TCCAGCATCG CACTGGCGGT CAACGTGCTG CTGCTGGTGG CCGTGCTGTC GATGCTGCAG
GCCACGCTGA CCTTGCCGGG CATCGCCGCC ATGGCCTTGG CGATCGGCGT GGCGATCGAC
TCCAACGTGC TGATCAATGA GCGCATCCGC GAAGAATTGC GCTCGGGCAT CTCCGCGCAG
GCGGCCATCC ACACCGGCTA CGAGCGCGCC TGGGCCACCA TCGTCGATTC CAACGTCACC
ACCCTGATTG CCGGCCTGGC CCTGCTGACC TTTGGCTCCG GCCCGGTGCG CGGCTTTGCC
GTGGTGCACT GCATCGGCAT CTTGACCAGC ATGCTCTCGG CCGTGCTGTT CTCGCGCGCT
TTGGTGAACC TGTGGTACGG GCGCCAGAAA AAGCTCAAGA GCCTGGCCAT AGGCCAGGTC
TGGAAGCCCG AGGCCGACAG CGCCGTGGTC AACATCAATC AAAGCGCATA A
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| Protein sequence | MNRYPVWKYT ILVIVLLVGV LYTLPNFFGE APAVQVSSAK TAVAVDAAVQ QRVQEALQAA
GITPDFVELQ GNSVRARFDT PDTQLQAKDA IEKALVPDAG NASYIVALNL VSRSPTWLKA
LHANPMYLGL DLRGGVHFML QVDMQAALTK KAESYAGDIR GLLRDQGIRH GGVSREGQNI
DIRVRDEATL TAARNAIARS LTDLQLSSRP EDGADSAGGG FRLRAFIKPE ATRLVQEQAL
KQNIVTLHNR INELGVAEPV IQQQGQDRIV VQLPGVQDTA KAKDILGRTA TLEVRMVDES
TEARSAASGR VPLPLGSERY PERNGQPVIV KKQVVLTGEN LTDAQPGFDG QTQEPTVNLT
LDAKGARIFR DVTRENVGKR MAIVLFEKGQ GEVVTAPVIR SEIGGGRVQI SGSMSTDEAH
DTALLLRAGS LAAPMEIIEE FTIGPTLGAD NIERGIHSVV WGLAAIALFM CCYYQLFGLF
SSIALAVNVL LLVAVLSMLQ ATLTLPGIAA MALAIGVAID SNVLINERIR EELRSGISAQ
AAIHTGYERA WATIVDSNVT TLIAGLALLT FGSGPVRGFA VVHCIGILTS MLSAVLFSRA
LVNLWYGRQK KLKSLAIGQV WKPEADSAVV NINQSA
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