| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3978 |
|---|
| Symbol | |
|---|
| ID | 4692405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 4362744 |
|---|
| End bp | 4364171 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639851727 |
|---|
| Product | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase |
|---|
| Protein accession | YP_998703 |
|---|
| Protein GI | 121610896 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01347] 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0395714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCA CTGCGCACGG CAAGCGAAAA CCCTCATCCC CATGGTTCCC GAAGTCCCCG
AAGCATTCCG AAAGAAGAAC TGGTATGGCC ATCGTAGAAG TCAAAGTCCC CGCACTGTCC
GAATCCGTGG TCGAGGCCAC CTTGCTGGCG TGGAAGAAAA AGCCCGGCCA GGCCGTGGCA
ATCGATGAGA TTCTGATCGA GATCGAAACC GACAAGGTGG TGCTGGAAGT GCCTGCGCCC
GCCGCCGGCC TGCTGGCCGA GATCGTTCAG GGCGACGGCG CCACGGTCGC CGCCGAGCAG
GTCATTGCCC GCATCGACAC CGAAGGCCGG GCGGCAGCAT CGGCTGCTTC GGCAGTTTCG
GCCGCAGCAG CCACTGTGGC GCCGGCCGCA GCCCAGGCAG CGAAGGCCGG CGTCGCCATG
CCGGCCGCCG CCAAACTGCT GGCCGACCAC CAACTGTCCG CCGCGTCGGT GCCGGGCACG
GGCAAGGACG GCCGCGTGAC CAAGGTGGAT GTGCTCGGTG CCGTGGCCCG CGGCGCAGCC
GCTACGACAT CCTTCGCAGC CGCTACGACA TCCTTCGCAG CCGCTACGAC ACCCTTCGCC
GCCGCTGCGA CACCCTCGGT TGCTGCAACA CCCCCCGCAT CCGCGACGCC CGCCATCCCG
ACCGGCGTTC CCGCCAAGGT CCTGCCCCAG GTGCCGGCGC CCGCATCCTC CAGGCCGCAG
TGGGGCGAGC GCCCCGAGCA GCGCGTTGCG ATGAGCCGTC TGCGTGCCCG CGTGGCCGAG
CGCCTGCTGC AATCGCAGTC GACCAACGCC ATCCTGACCA CGTTCAACGA AGTGAACATG
GCACCGGTGA TGCAGATGCG CAAGAAGTTC CAGGACGCAT TCACCAAGGA GCATGGCGTG
AAGATCGGCT TCATGGGCTT TTTCGTGAAG GCGGCAGTGC ATGCCCTGAA GAAATACCCG
GTGCTCAACG CGGCCGTCGA TGGCAACGAC ATCGTCTACC ACGGCTACTT CGACATCGGC
ATCGCCGTCG GCTCGCCCCG TGGTCTGGTG GTGCCGATAC TGCGCAACGC CGACCAGATG
GGCTTTGCCG ACATCGAAAA GAAAATCGCC GAGTTCGCCC AGAAGGCCGC GGACGGCAAG
CTGGAAATTC AGGAGCTGAC CGGCGGCACC TTTTCCATCT CCAATGGCGG CACTTTTGGC
TCGATGCTGT CCACGCCCAT CATCAACCCG CCGCAGTCGG CCATCCTGGG CGTGCACGCC
ACCAAGGACC GCGCCGTGGT GGAGGACGGC CAGATCGTCA TCCGCCCGAT GAACTACCTG
GCCATGTCTT ACGACCACCG CATCATCGAC GGCCGCGAAG CCGTGCTGGG CCTGGTGGCG
ATGAAGGAGG CGCTGGAAGA TCCTGCGCGC CTGCTGTTCG ACATCTGA
|
|---|
| Protein sequence | MNATAHGKRK PSSPWFPKSP KHSERRTGMA IVEVKVPALS ESVVEATLLA WKKKPGQAVA
IDEILIEIET DKVVLEVPAP AAGLLAEIVQ GDGATVAAEQ VIARIDTEGR AAASAASAVS
AAAATVAPAA AQAAKAGVAM PAAAKLLADH QLSAASVPGT GKDGRVTKVD VLGAVARGAA
ATTSFAAATT SFAAATTPFA AAATPSVAAT PPASATPAIP TGVPAKVLPQ VPAPASSRPQ
WGERPEQRVA MSRLRARVAE RLLQSQSTNA ILTTFNEVNM APVMQMRKKF QDAFTKEHGV
KIGFMGFFVK AAVHALKKYP VLNAAVDGND IVYHGYFDIG IAVGSPRGLV VPILRNADQM
GFADIEKKIA EFAQKAADGK LEIQELTGGT FSISNGGTFG SMLSTPIINP PQSAILGVHA
TKDRAVVEDG QIVIRPMNYL AMSYDHRIID GREAVLGLVA MKEALEDPAR LLFDI
|
|---|
| |