| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3825 |
|---|
| Symbol | |
|---|
| ID | 4693539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 4221789 |
|---|
| End bp | 4226765 |
|---|
| Gene Length | 4977 bp |
|---|
| Protein Length | 1658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639851574 |
|---|
| Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
|---|
| Protein accession | YP_998552 |
|---|
| Protein GI | 121610745 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0358491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.103915 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCATTC ATCACCTGCT CCAACAGGCC GTGAAAATAT CGGCTGCCAT CAAGCCGGGT
CTGCTGTTGG CCGCCATGGC CGGCAGCATG ATGCTGTCGG CAGCGTCTGC AGACGTTGAT
GTATCAAGGC CGGAAAACGC AATACCGCCG AATATCGTCA GCGCTGCCAG CAAGCCCATG
GTGATGCTGA CTGCGTCCAA AGACCATTTG CTTTTTGGCC CCATCTACAA CGACTTTGAG
GACATCGATG GCGATGATGT CATCGACACC ACCTTCAAGC CAACGTTCCT GTATTACGGC
TATTTCGATG CGAGCAAATG CTATGCTTAC GACAACAATG CCGGCCAATT CAATCCGGCA
GCCATGGCCA CCCAGACCGC CGTCACGGTC GGCACGGTGA CTGCCATCAA ATACAGTTGC
TCACCCCAGG TATCCCATTG GAGCGGCAAT TTCCTCAACT GGGCCACGAT GACCCGATTG
GATACCGTTC GCAAGATGCT GTATGGCGGA TACAGGCAAC AAGACAGCAG TGGGTCGACG
GTTTTGATGG GGTCCAGATT GGTTCTGGAC GCGCATTCGT TCGTCAAGTA TTACAGGGGA
ACCGACATCC GTGATTACAC GCCGTTCAGT GAGGGATCTC TGGTAAAGAC AACGGGAAAC
AACGCCGGGG TTTATGCGGG TCTGAGCATT TGCGTGACCG GCACCAGCGA AAATCCAGGC
ACATCGCAAC CCATTATGCG TTTGGTCAAG GGGAATGTGC GCTTCTGGTC GACCGTGGAA
TTGCTGGTAT GCCGGTGGCG TGACGCTCCC GATAATTACA AGACCGGCAC TTTCGGGCCA
AAGCTCGCAC AATTCTACCT GCAGCCAGGA GGTGGAGGGG TCCGGCATGA AACGAGCATT
CCGTCACGGA CACTGGATGG TGCTACTTAC TCCGGCATTG GACCGGATTT GAATGTTCGG
GTCAAGGTAT GCGACCCTGC AATTTTGGGT GCAGAGCGTT GCCAGGCCTT TCCATCCGGC
TTGAAACCCT TTGGCTTGCT TCAGGAATTT GGCTACCCCA AAGCCCATGG CGAAGCGGCC
CGGGCAGAGT TCGGACTGAT CACTGGCAGT TATGACCGGA AAAATACGGC AGGGGCGCTG
CGAAAAAACA TGCGTGATCT GGAGGATGAA ATCAATCATG ATACCGGTGT TTTTTGCCAT
AGCGCCTCGT CTGGCTGCCC CGCAGTGCCA CTGGATAATA ACCAGACGAT AGCTCCTGGC
GTCATCAAGA CATTCGACGC CATCGTTCTT TATGGGCGCA TGCAAGACCA TACCTACGGA
TCGGGATGGG GAGCGAGTGT GGCGCCAAGC AACTCTGGTG AAACCCAACT GCCGGCCTGG
GGTAATCCGA TGGGTGAAAT GCTGATCCAG GCATTGCAAT ACTATGCTTA TGACGGGTCG
ACACCCACGC CGACCAATCC GTCATCCAGG ACTGCCGATA GCAGTGTCGG CATGCCGGTT
GCCAACTGGA GCGACCCGTT CACCGATTCA GAGACACGCA GGGCCAAATA TGGCAATGCG
GTTTGCCGTC CATTAAACAT TCTGGCACTT TCTTCCAGCA CCCTCAGTTT CGATGGGCAA
GGGGTCGTGC CATTTGGTAC CTTGCCGGAT TCCGCTGCCG GCCTTGATTC CTTTGTCGAC
AAGATAGGTG ATGCAGAAGG CATCAGCAAT ACGGTTCGTT CCGTCGGTTC CGTTGCCGGC
AAGAATATGA CGGCCGCCAC CGACAAGAAT TCATGTGCTG CGAAAACAGT GACCCGGCTT
TCCGATGTGA ACGGTATTTG CCCCGAAGCT CCAGCCATGG GGGGAACCTA CCAGATGGCG
GGCGCTGCGC TCTATGGCAA TACCACGCAG ATTCGTCATT TGACCCGCCC TCCTGCCGAC
CTTGCCACAG TGGAAAATGC CTTGAAGATC AAGACCATGG CGGTTTCCCT CTCCGGCGGA
GCGCCGCGCA TCGACGTTCT CGTTCCGGGC AGCGTGCCTC CAAAATATGT ATATATCACG
CCCGAAAGCG TGTTCGCGCG CGGTCAGGTA GGCTCCCCCA TGACCTTTGC CTCCATCAGT
TCCGGCCCGA CCCATGGCGC ATTCATGGTG ACCTGGAACG ATATTTTGAT GGGCGGTGAC
CACGATATGG ATATCACCGG CTTCATTCGT TATGACTTGA GCAAAAACGA AAACTCCCCT
TCCGGCTGGG ACATCAGTAT TTTGACAGAT ATTACCAATG TCGCCGGCGG TGGCTCGGGG
ACGCATGGCT TCAGCATCAT CGGAGTTCAG AATCCGGATG GCCGCAGCGG CAATGGCCGA
TATCTCACCC ATCAACACAT CGGCGGGCTG CTCACTGGAA TATCGCCGGA AAGTGATTAT
CTGTGTGGCC AGCCCTCCTA TAGAAACAGA ACGCTCCCTG GAAGCAGTTC AAGGTACAGT
GAAACCGTGT GCAGTGTCTC AGGGGATGGA TCTACCGGCG ATCCCAACAA TCCGCATCTG
CATCCGTATT TTACGGTACA GAATCGGGAA TTCATCGTTC GCCATACTTT CAACATGGTG
GGAGAAAAGA ATGCCCTCAT CAAGGATCCA CTCTGGTACG CCGGAAAATA CGGTTCCTTC
AAGTCTGGTG TAAAAAATCC CGATGGCACC TACCAAACCC TGGCCATGCC TTCCACCCAG
GATACCTGGG ACAGTATCAA AACGGACGGA AGCATCGGCC AGGATGACAT TCCGGACGGG
TATTTCCTTG GCCGCCGCCC GGAGTTGCTG GAAGCGTACC TGCGCAATGC GCTCAATGTG
CTGGCCAAAA ACACCAATGC CGTGCCGACC ATTGCAGCAG CGCAATTGTC GAGCGCCGAG
CATAAATTCA TGGCGCGCTT CGACAGCACT GCCGTGACGG GTGAACTGGA GGCTTATGAA
GTCGATTCCA GCGGGAAATT CAGTGCCACG CCGGCCTGGA AAGCGGGGGC CCTGCTCCAG
GCTCGGACCG ATGTCGCCAA CAGCAGAGAA ATCATTACCA ATAACGGAAA TGGCCCGGCG
GCAGGCGTCA AATTCAGATG GACGAGCCTG CCTGAAGATT ATAAAAATAA AATGACGGCG
CAGAGCAAGA ACCGGTTGTC GGGAACGAAT GCCAAGTTGG CGCTGGAGTA TATTCGCGGC
GATCAATCAC GGGAAGGCTT CAACGGGCTG CGTCAGCGTG TGGGCAGCCT GCTTGGCCCG
GTGGTGAATG CGACTCCCTG GGTCCAGGGC CGCCCTGACG CTACCTTGGC CGGCCTCAGG
TCGGACGACG GTTATGTCAC TTTTTTCAAA AACCATAAAG ACCGCGCCAA GCTGCTTTGG
GTGGCCGCCA ACGACGGCAT GTTGCATGCG TTCAATCCCG ACACCGGTGC CGAGGTTTTT
GCCTATGTGC CAGGCGCATT GGCCAACCGG CTGGCGGAGA TACCGTTGCA GCGGGGTAGC
AACGCTGCCG GGCGCACGAA ATTGGCTGGA AAGGATTTTG TGACCGGCGC CGAGAATCTT
CCTCCCCATG GCACGGTCTG GCCCTATGTC GACGGCAATC CTTTTTCTGC CGATGTCAAA
GTGGGCATCG CAGCGGGCAC CGCCTGGAAA ACCTATGTAT TTGGCACCTT GGGGCGCGGT
GGCAAAGGTG TTTTTGCGCT GGATGCCACC CGTATTGCCG ATTTGACTGA AGACAATGCG
GCCAATGTGT TCAAGTGGCA ATTCACTGCG GCCGATGACC CGGACCTGGG ATATATCACC
GGGGAGGTGT CGATCCATGC CACCTCCAAC CAGGCCTTGC CGGTCGCCAA GATGAACAAT
GGCAAATATG CCCTGCTTTT GGGCAATGGC TACAAATCCG AATCGGGCAA GGCGGTGTTG
TATGTTCTTT TTGTCGATGG CCCCGGTGGA AATGGCTGGA CGCCGGGTCG TGACGGGAGT
TACCTGAAAA TCGTGGCGGA TGCCGGACCC GGCAACGGCC TGTCGATGCC CCGCTGGGAA
GATATCGATG GCGATGGCAC GGCCGATGTG GCTTATGCGG GCGATCTCAA GGGCAATATC
TGGAAATTTA ATTTGCAGCA CCGCACCAAC CCGACCATGT GGCAGGTTGA TCCCCAGGAT
GGATCAGCAT CCTTCGGACC AGGCAATGCC AGCAGTGTCG GTCGCACCTG GCCTTTGCAC
AATGCCGGCC ATCCGATTAC GACGGCGCCA CAGCTCATGC ATATGGGCCA GGGCGGACTC
ATGGTCAATT TTGCGACCGG CAATGCATTT GGTGATGCAG ATTTCCCCAG GGTCGGGGTG
ACGCAGCGGG TGTATGGCAT TTGGGATCGA CGTTCCGTCG CCGGAGCGCC GCCCTTCGCT
CAGACCCGGA CCATCGATGC CAATACCTTG GTGCGCCGCA CATACACACG CAACGCCGAG
GGTGTGGTCA CCGTCGCTGC CGATACCCCG GCTTTGGATT GGTCTGCCCA CAATGGCTGG
TATATCGATT TGCCAGGTCC CGGCGAGGCT GTCCTGTCAG ACCCGTTTCT GGATGCAGGG
GTCTTGTCGT TTGTGACGGT TCGCCCGAGG GAAGTCGTCA CTGGAGAATC TGCGCCTTGC
TTTTCAAACC ACCGCACGGC GTTTTATACC GTGGATCCGA TTGCGGGCAA GGCCGAGCGC
GATCTCCAAG GCAGCATCAT GCTGAACAGC ACGAAGGTGC TTGTCACAGC CAGGGACATT
GGCGATCAAA AGGTGCGTTT GGTCATTGAC AAAACCAAAA AGGCTTTTAC CAAAGCCTGC
CAAGCCGGGG AAGCCGGTTG CACTTGCACG GAAGGCACTT GCACCAAGGC CGCCACCTGC
GGCCCCGGGC AACGCGCCAG GAGGATCGTC GGCAGTAGTG CTGATGCGAC CATCTGCGTG
AGCACTGTGC CACGGTTACA ATGGCGGGAA ATTCCAGGAC TGAGGACAGA CCAATGA
|
|---|
| Protein sequence | MAIHHLLQQA VKISAAIKPG LLLAAMAGSM MLSAASADVD VSRPENAIPP NIVSAASKPM
VMLTASKDHL LFGPIYNDFE DIDGDDVIDT TFKPTFLYYG YFDASKCYAY DNNAGQFNPA
AMATQTAVTV GTVTAIKYSC SPQVSHWSGN FLNWATMTRL DTVRKMLYGG YRQQDSSGST
VLMGSRLVLD AHSFVKYYRG TDIRDYTPFS EGSLVKTTGN NAGVYAGLSI CVTGTSENPG
TSQPIMRLVK GNVRFWSTVE LLVCRWRDAP DNYKTGTFGP KLAQFYLQPG GGGVRHETSI
PSRTLDGATY SGIGPDLNVR VKVCDPAILG AERCQAFPSG LKPFGLLQEF GYPKAHGEAA
RAEFGLITGS YDRKNTAGAL RKNMRDLEDE INHDTGVFCH SASSGCPAVP LDNNQTIAPG
VIKTFDAIVL YGRMQDHTYG SGWGASVAPS NSGETQLPAW GNPMGEMLIQ ALQYYAYDGS
TPTPTNPSSR TADSSVGMPV ANWSDPFTDS ETRRAKYGNA VCRPLNILAL SSSTLSFDGQ
GVVPFGTLPD SAAGLDSFVD KIGDAEGISN TVRSVGSVAG KNMTAATDKN SCAAKTVTRL
SDVNGICPEA PAMGGTYQMA GAALYGNTTQ IRHLTRPPAD LATVENALKI KTMAVSLSGG
APRIDVLVPG SVPPKYVYIT PESVFARGQV GSPMTFASIS SGPTHGAFMV TWNDILMGGD
HDMDITGFIR YDLSKNENSP SGWDISILTD ITNVAGGGSG THGFSIIGVQ NPDGRSGNGR
YLTHQHIGGL LTGISPESDY LCGQPSYRNR TLPGSSSRYS ETVCSVSGDG STGDPNNPHL
HPYFTVQNRE FIVRHTFNMV GEKNALIKDP LWYAGKYGSF KSGVKNPDGT YQTLAMPSTQ
DTWDSIKTDG SIGQDDIPDG YFLGRRPELL EAYLRNALNV LAKNTNAVPT IAAAQLSSAE
HKFMARFDST AVTGELEAYE VDSSGKFSAT PAWKAGALLQ ARTDVANSRE IITNNGNGPA
AGVKFRWTSL PEDYKNKMTA QSKNRLSGTN AKLALEYIRG DQSREGFNGL RQRVGSLLGP
VVNATPWVQG RPDATLAGLR SDDGYVTFFK NHKDRAKLLW VAANDGMLHA FNPDTGAEVF
AYVPGALANR LAEIPLQRGS NAAGRTKLAG KDFVTGAENL PPHGTVWPYV DGNPFSADVK
VGIAAGTAWK TYVFGTLGRG GKGVFALDAT RIADLTEDNA ANVFKWQFTA ADDPDLGYIT
GEVSIHATSN QALPVAKMNN GKYALLLGNG YKSESGKAVL YVLFVDGPGG NGWTPGRDGS
YLKIVADAGP GNGLSMPRWE DIDGDGTADV AYAGDLKGNI WKFNLQHRTN PTMWQVDPQD
GSASFGPGNA SSVGRTWPLH NAGHPITTAP QLMHMGQGGL MVNFATGNAF GDADFPRVGV
TQRVYGIWDR RSVAGAPPFA QTRTIDANTL VRRTYTRNAE GVVTVAADTP ALDWSAHNGW
YIDLPGPGEA VLSDPFLDAG VLSFVTVRPR EVVTGESAPC FSNHRTAFYT VDPIAGKAER
DLQGSIMLNS TKVLVTARDI GDQKVRLVID KTKKAFTKAC QAGEAGCTCT EGTCTKAATC
GPGQRARRIV GSSADATICV STVPRLQWRE IPGLRTDQ
|
|---|
| |