| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3696 |
|---|
| Symbol | |
|---|
| ID | 4694612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 4087935 |
|---|
| End bp | 4088753 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639851451 |
|---|
| Product | conjugal transfer protein TrbG/VirB9/CagX |
|---|
| Protein accession | YP_998429 |
|---|
| Protein GI | 121610622 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.831321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGC GCACCTTCGC CATCACTGCA TCTGTTCTGG CTGGCAGCGC CCTGGCGCAG
GCCGCGCCCG AGAGCGAAAT CTCCGTGCCG ATCCCCGGAA ATCTCGATCC GCGCATCGTG
ACGTTCGCCT ATACGCCCGA TGTGGTCTAT CAACTGCCGG TGACGGTGGG CATGCACACC
CACATTCCTT TCACGGCCGA TGAAGAGCTG TCGGAGCCGC CCTCGATCGG CGAGAAGGTG
CGCTGGCGGC TCGAAGGCAA TGAGAAGAAC ATCTACATCA AGGCGCTGCA GCCGGGGGTG
CGCACCTCCC TGACGCTGGT CACCAACAAG CGGACATACC AGTTCGAGCT GATCGCCACG
ACAAAGCCGA ACGAGCGCAT CCAGAAGGCG CAGTTCACCT ACCCCGATGA GCAAGCCGGC
ATCCAGATGG CCTGGCGCAA CAAGACCGAG CGTGCCGCCG AGCAAGCCGC GCAGATCGAG
CGCCACCGCA AGGCGCAGAA CCTGTCGGAC GCCCCCATGG ACGCCAGCCA ACTGGCGTTC
TATTCGGTGC GCACGGACAA CACGCAGTAC CAGCGCATGC ATGTCTATTC CGATGGCGTC
AAGACCTGGA TGCGGCTGCC CCCGGGAGTG CAGGACCTTC CGGCGGTTTT CATGGTGGAC
AAGGACCAGC GCGGCCGTGA GCAACTGATG CCGGTGAACT ACACGGTTGC CGATCGCGAA
AACCTGCGCG ACCGGGACGT GATCATCATC GACCGTACGG CAGCGCTGTG GATGCTGCGC
ATCGGCCAGT CCATCGAGGT CCGTGTGGCA CGCGATTGA
|
|---|
| Protein sequence | MKLRTFAITA SVLAGSALAQ AAPESEISVP IPGNLDPRIV TFAYTPDVVY QLPVTVGMHT
HIPFTADEEL SEPPSIGEKV RWRLEGNEKN IYIKALQPGV RTSLTLVTNK RTYQFELIAT
TKPNERIQKA QFTYPDEQAG IQMAWRNKTE RAAEQAAQIE RHRKAQNLSD APMDASQLAF
YSVRTDNTQY QRMHVYSDGV KTWMRLPPGV QDLPAVFMVD KDQRGREQLM PVNYTVADRE
NLRDRDVIII DRTAALWMLR IGQSIEVRVA RD
|
|---|
| |