| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3246 |
|---|
| Symbol | |
|---|
| ID | 4691712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 3622180 |
|---|
| End bp | 3622806 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639851009 |
|---|
| Product | RNA polymerase sigma factor RpoE |
|---|
| Protein accession | YP_997994 |
|---|
| Protein GI | 121610187 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0104683 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCC CTGAGCCCTC CCCCGCCGAG AACAGCGATC TCCAACTGGT GGAACGCACG
GTCGCGGGCG ATCAGCGAGC CTATGAGTTG CTGGTCATCA AATACCAGCG CCGCATCGAG
CGCTTGATCG GGCGCATGGT GCGCGACACG GATCTGGTCC AGGACATTGC CCAGGAGACG
TTCATCCGGG CTTACCGCGC CCTGCATCAA TTCCGGGGCG ACGCGCAGTT CTACACTTGG
CTGTACCGCA TTGCCGTCAA TAGCGCGAAG AAGGCGTTGA TGGAGATGAA GCGCAATCCG
GTCATTTCCG AAAATGCCTT GCGTGGCAAT GAGCAAGAGG ACGAAACTTC CTATCCCGGG
CATGAACTAA CCAGCGACGA AACCCCTGAG ACCGTGCTGG CCGCCCAAGA GGTCGCGCAG
GCCGTGAACG CGGCCGTGCA GGACTTGCCC GAGGATCTGC GCCAGGCCGT GGTGCTGCGC
GAGATCGAGG GGCTCAGCTA CGAGGAGATT GCTGCGGCCA TGGGCTGCCC TATCGGCACG
GTCCGGTCCC GGATATTCCG GGCGCGCGAG GCCATTTCGG CCAAAGTGCG TCCGTTGCTT
GAGAACCAGT CAGGCAAACG GTGGTGA
|
|---|
| Protein sequence | MTVPEPSPAE NSDLQLVERT VAGDQRAYEL LVIKYQRRIE RLIGRMVRDT DLVQDIAQET
FIRAYRALHQ FRGDAQFYTW LYRIAVNSAK KALMEMKRNP VISENALRGN EQEDETSYPG
HELTSDETPE TVLAAQEVAQ AVNAAVQDLP EDLRQAVVLR EIEGLSYEEI AAAMGCPIGT
VRSRIFRARE AISAKVRPLL ENQSGKRW
|
|---|
| |