| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3198 |
|---|
| Symbol | |
|---|
| ID | 4693903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | + |
|---|
| Start bp | 3566229 |
|---|
| End bp | 3567872 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639850961 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_997946 |
|---|
| Protein GI | 121610139 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.271789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACATG CCCTGAAAGC CGTGGCCGTC TCGGCCATGA TGTCGGCCAT GATGTCGGCC
ATGGTATCGG CCATGGTATC GGCCATGGTA TCGGCCATGA TGTCGCCGGG CGGCGCGCAC
GCCGCCACGC CGGCGGACAC GCTCGTGATC GCGCGCGACA TCAGCGCTTT CCTCTCGCTC
GATCCGCAAG AGGCGTTCGA GATTGCCTCC GGCGACACGC TGAACAACCT CTATCTGCGG
CTGGTGCAGC ACGACCCGCG CGATTTCCGG AAGATCATCC CGGGTGCCGC CGAGCGTTGG
GAGGCTTCGG CCGACGGCCG GCAGGTGGTG TTCAAGATCC GGTCCGGGCT GAAGTTCCAG
TCCGGCAATC CGCTCACGGC CGAGGACGCA GCGTTCTCGC TGCGCCGTGG GGTGCTACTG
GGCAAGCCGC CGTCGATCAT CCTGCGCCAG TTCGGCTGGT CCAAAGACAA CGTCGGGCAG
AAGGTGCGCG CCGAAGGCGA CAGGCTGATC GTCTCGTTCG ACCGGCCCTA TGCGCTCGAT
CTCGTGCTCA GCGCGTTCAG CGCCGCCATC GCCTCGGTGG TCGATAGCAA ACTGGTCATG
GCCAACGCGC GCAATGGCGA CCTCGGCAAC GCCTGGCTGC GCACCCGCTC GGCGGGCGCC
GGCGCCTACA GGCTGCTCGA ATGGAAGGCC AAGGATGCCG TGGTGATCGA AGCCTTCCCC
GGCTACGCGG GCGGCGCCGC GCCGCGCATC AGGCGTGTGA TCGTGCGGCA TGTGGCGGAG
GCGGCGGCGC AACGGCTGCT GCTGGACAAG GGCGATGTCG ATGTCGCCGC CGACCTCAAC
CCCGACCAGG TGCGGGCCAT CGCCTCGAAC CCGGATCTGA AGGTGGTGCA GGTGCCGCGC
GACACGGTGT TCTACCTGGC GCTGAACCAG GCCAACCCGA CCCTCGCCAA GCCCGAGGTC
TGGCAGGCCG CGCGCTGGCT GGTCGACTAT GACGGCATCG CCAACCAGCT CTTTCGCGGC
CAGTACAAGG TCAACCAAGC GCCGGTGGCG CAGGGCATGG CCGGCGCCCT GCCGGAGCGG
CCGTACAAGC TCGATGTCGC CAAGGCCAAG GCGCTGCTCG CCAAGGCGGG GCTGGGCGGC
GGCTTTACGG TGTCGGTCGA CGCGATGGCG GCCACCCCCT ACCGCGAGAT CGCGCAGTCG
CTGCAATCGA CCTTCGGCCA GGCCGGCATC GTGCTCGACC TGCGCGTGGC CGAGCCCTCG
CAGGTGCTGA CCCGCTACCG CGAGCGCCGC CACGACATGA TCGTGTTCGT CTGGTCGCCG
GACTATTCGG ACCCGAGCTC GACCATCGAG TTCTTCGCGC GCAACACCGA CAACGGCGCA
GGCGTTGCCA ACAAGAACGC CGCCTGGCGC AACCACTGGC TGATTCCGCA ACTGACCGTC
GAGACCGAGC AGGCTTCGCG CGAGATCGAT CCGCCGGCGC GCGTGCAGCG CTACGGCCAC
TTGCAGCGCG TGCTGCGCGA CGATTCGCCG TTCGTCTTCA TGATGCAAAA GGACGATCCG
GTTGCGATGC GCAAGAACGT GCAGAACTAC GGCGGCGGCG TGACCTTCGA CTCGACGCAC
TACCACATCA TCGAGAAGAA ATGA
|
|---|
| Protein sequence | MRHALKAVAV SAMMSAMMSA MVSAMVSAMV SAMMSPGGAH AATPADTLVI ARDISAFLSL
DPQEAFEIAS GDTLNNLYLR LVQHDPRDFR KIIPGAAERW EASADGRQVV FKIRSGLKFQ
SGNPLTAEDA AFSLRRGVLL GKPPSIILRQ FGWSKDNVGQ KVRAEGDRLI VSFDRPYALD
LVLSAFSAAI ASVVDSKLVM ANARNGDLGN AWLRTRSAGA GAYRLLEWKA KDAVVIEAFP
GYAGGAAPRI RRVIVRHVAE AAAQRLLLDK GDVDVAADLN PDQVRAIASN PDLKVVQVPR
DTVFYLALNQ ANPTLAKPEV WQAARWLVDY DGIANQLFRG QYKVNQAPVA QGMAGALPER
PYKLDVAKAK ALLAKAGLGG GFTVSVDAMA ATPYREIAQS LQSTFGQAGI VLDLRVAEPS
QVLTRYRERR HDMIVFVWSP DYSDPSSTIE FFARNTDNGA GVANKNAAWR NHWLIPQLTV
ETEQASREID PPARVQRYGH LQRVLRDDSP FVFMMQKDDP VAMRKNVQNY GGGVTFDSTH
YHIIEKK
|
|---|
| |