| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3067 |
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| Symbol | rumA |
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| ID | 4692013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | + |
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| Start bp | 3417939 |
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| End bp | 3419399 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639850826 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_997818 |
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| Protein GI | 121610011 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0799904 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0471962 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAC CGAAAGAACC ATCCCCCGCA TTGGCGTGCG CCGCACAGGA TGGCAGCGGC
CTGCCCGAAG GCTGGCTGCA GGTGCAGTCG ATGGACCTCG ATGCCCAGGG CGTGGCCCGC
AGGGCCGACG GCAAGGTGGT GTTCATCGAC GGTGCGCTAC CGTCGGAATG GGTCAGCGCC
AGCACCTACC GAAAGAAAAA CCACTGGGAG CAGGCCAACC TGACGGCGAT CCACCGCGAA
TCCGCGCAGC GCGTGCGCCC TGGCTGCCCG CATTTTGGCC TGCATGCCGG CGCTTGCGGC
GGCTGCAAGA TGCAGCATCT GCATATGGGG GGGCAGGTGG CGGTCAAGCA GCGGGTGCTG
GAAGACAACC TCTGGCACCT GGGCCGGGTC AAGCCCGCCA TGGTGCTGCG CCCCATCGAG
GGCCCGGCCT GGGGCTACCG CTACCGGGCC CGCCTGTCCG TGCGCCATGT GATCAAGAAG
GGCGTGGTGC TGGTGGGTTT CCATGAGCGC AAAAGCCGTT ACGTGGCCGA CATGGCGCAA
TGCCCCGTGC TGCCGCCCCA TGCGGCGGCG CTGCTGATGC CGCTGCGCTC GCTGATCGCC
GCGCTGGATG CGCATGACAG TTGCCCGCAG ATCGAGCTGG CCTGCGGCGA CAGCGTGACC
GCGCTGGTGC TGCGCCACCT GCAGCCGCTG AGCGTGGGCG ATCACGCCCG GTTGCGCGCC
TTTGCGGCCG AGCACGGCGT GCAATGGTGG CTGCAACCCC GGGGTCCGGA CACCGTGCAA
CCACTGGACG AGGGCGGCGA GCAACTGTCC TACGCCCTGC CGGACTTCGG CATCACGATG
CCGTTCAAGC CCACCGACTT CACCCAGGTC AACCCCCATA TCAACCGTGT GCTGGTTGCG
CGCGCGTTGC GGCTGCTGGC GGTGCGCCCC GATGAGCGCG TGATCGACTG GTTCTGCGGT
CTGGGCAACT TTACGCTGCC ACTGGCCACA CAGGCGCGTG CGGTGCTGGG CGTCGAAGGC
AACGCGGCCC TGGTCGCCCG TGCGCGCGCG AACCATGGCC TGAACCAGGC CCTGGCGCAG
AACCATCGCG TGCTGGCTGC CACCGATTTC GTGGCCTGCA ACCTGTTCGC GATGACTCCC
GGAATGCTGC TGGGCCATGG TGCGGCCGAC AAGTGGCTGG TCGACCCGCC CCGCGAGGGC
GCCCTGGCCC TGGTCAAGGC GCTGGCCGAC ATCGAGCAGT CGCGCCGAGG TGCGCAGGGC
GCTACTGCGC TGCCCGCCGG CGCCGAGGAC TGGGTGCCGC CCCGGCGCAT TGTCTACGTC
AGTTGCAACC CCGCCACGCT GGCGCGGGAT GCCGCTTTGC TGGTGCATCT GGCAGGCTAC
CAGTGCGCGG CGGCAGGGAT GGTGAACATG TTCCCGCACA CCGCCCATGT CGAGAGCATC
GCGGTGTTCG AGCGGGGCTG A
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| Protein sequence | MSEPKEPSPA LACAAQDGSG LPEGWLQVQS MDLDAQGVAR RADGKVVFID GALPSEWVSA
STYRKKNHWE QANLTAIHRE SAQRVRPGCP HFGLHAGACG GCKMQHLHMG GQVAVKQRVL
EDNLWHLGRV KPAMVLRPIE GPAWGYRYRA RLSVRHVIKK GVVLVGFHER KSRYVADMAQ
CPVLPPHAAA LLMPLRSLIA ALDAHDSCPQ IELACGDSVT ALVLRHLQPL SVGDHARLRA
FAAEHGVQWW LQPRGPDTVQ PLDEGGEQLS YALPDFGITM PFKPTDFTQV NPHINRVLVA
RALRLLAVRP DERVIDWFCG LGNFTLPLAT QARAVLGVEG NAALVARARA NHGLNQALAQ
NHRVLAATDF VACNLFAMTP GMLLGHGAAD KWLVDPPREG ALALVKALAD IEQSRRGAQG
ATALPAGAED WVPPRRIVYV SCNPATLARD AALLVHLAGY QCAAAGMVNM FPHTAHVESI
AVFERG
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