Gene Veis_2954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVeis_2954 
Symbol 
ID4690403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVerminephrobacter eiseniae EF01-2 
KingdomBacteria 
Replicon accessionNC_008786 
Strand
Start bp3305661 
End bp3307499 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content63% 
IMG OID639850714 
Productdiguanylate cyclase 
Protein accessionYP_997707 
Protein GI121609900 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0512853 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAAAC GATGGTGGTG GGTGGCGCTG GTGCTGGCGC TATGTCCGTT TTGGACCTCT 
CAGGCGGGGG CTGGCTTGGT CCGCCTGGTG CCCGGCCAGG GCAGTTACGA CCTGGGCGCC
ATGGCCGATG TGTTGGAGGA CGTGCCGGGC CGGTTGCGGC TCGATGATGT GCTGGCCGGC
GGCAGTGCTG CGTCTGCCTT CAGTTCCCAT ACCGGCCGCC TGTCCAGTTT CGGGTTTACC
AGGTCGACTT TCTGGTTCCG CGTCGAGATC GACAATCCCG CGCCTGCGCC GAGCGACATG
CTGTTGGTGC TGCGCACCCC TTGGCTCGAC TCCGTGCGCT GGTTCCGCCC GGACGGGCAG
GGTGGCTATG TCGAACGACT GCTGGGCGAT CACCTGCCGT TCAAGGCCCG CTCCTATGCC
ACGCCGCAGT TTCTGATCGA CGTGCCGGTG CTGCCCGGCA AGCACAGCTA CTACCTGCGT
CTGGCCAGTG CCGGGGCCTT CATGACGCCC ATCGAGCTGT GGAGCCGCCA GGCTTTCCAT
GACAACGATC GCCTGTGGGC GGCCTACTAC GGGATGTTCT ACGGCATCCT GTGCATCATG
GTGCTCTACA ACGGCTGCAT CTGGGCCTCC ACGCGCGACC GCAGTTACTT CGTTTACTGC
CTGTACCTGG CGGTGTTTTT CCTGATGAAC TTTTCGTACA ACGGCTTTGC GTTCCAGTAT
TTCTGGCCTG AGTCGCCCCG CTGGAGCAAT TGGAGCCAGA CGCATTGGAT CTTCGCGTTC
CAGGGGCTGG CGGTATTGTT CACGATGAAT TTCCTGGAGT CGAAAACCCG CCTGCCGCGC
ATGCACCGGG TCTTGCAAGC CTTCCTGGTG GTGCTGGTCG GCAGTTGGAT CGCGGTCACC
GTCAGCGGCG ATATCGTGGC CTACCACGCG GTGCCGATTT ATTTTATTTT TGGCTGCGCG
CCGCTGATTC TGGCCGCAGG CTTTCTGGCC TTGAGGCCCG GTTATCGGGC GGCGCGCTTT
TTCGTGCTGG CCTTTGTCGC CAGCATCACC GGGAGTTTTT TCACGGCGCT GACCGTGAGC
GGCCTGATTC CCTATACCTT TGCCAATTTC CACGCCTCCG AGTTCGGCCT GCTGGCGGAC
ATGGTGCTGC TCTCGCAGGC CCTGGCCGAT CGCGTCAAGC TGTTGAGCGA ACAGCGCGAT
GCGGCCGAGT TGCGCGAAAT CGAGCAAAAG ATCGCCACCA CGGCCTTGCT GAAACAGGCC
AACGAAGACC TGGAGCGAAT GGTGCTGGAG CGCACTTCGG AGCTGGCCAG GGCGCGCGAC
GAAGCCGAGC ACTTTGCCCG CATCGACATG CTGACGGGCG TGGCCAATCG CCGTTACTTC
GAGGAAGTCG CGACCATGGA ATTTGCCCGG ACGCAGCGTG GCCAGCAAGC CTTGTCGGTC
ATCCTGATCG ATATCGATCT GTTCAAGCAG GTCAACGACC GCTATGGCCA TGCGGCCGGT
GATGCGGTGA TCCGGGCCGT CGCCCGCCTG GCCAAGGAGT CGGTGCGGGA GTCCGATTTC
GTGGCCCGCA TCGGTGGCGA GGAGTTCTCC GTCCTGTTGC CCGGCATAGG GCAGGCGCCG
GCCTTTGCCA CCGCCGAGCG TTTGCGTGAG CGGATTGCCG CCTGTGTGGT CGAGCATGAC
GGACATTCGC TGGGCTTTAC CGCCAGCTTT GGCGTCAGCG AGCAGGTTGC CGACGACCCC
GGGTTCAGCA GCCTGTTGCG CCGGGCAGAC CAGGCCCTGT ACGCTGCCAA GCAGGCGGGG
CGCAACCAGG TGGTGGTGCA GGCGCTCGAG TGGGGGTGA
 
Protein sequence
MGKRWWWVAL VLALCPFWTS QAGAGLVRLV PGQGSYDLGA MADVLEDVPG RLRLDDVLAG 
GSAASAFSSH TGRLSSFGFT RSTFWFRVEI DNPAPAPSDM LLVLRTPWLD SVRWFRPDGQ
GGYVERLLGD HLPFKARSYA TPQFLIDVPV LPGKHSYYLR LASAGAFMTP IELWSRQAFH
DNDRLWAAYY GMFYGILCIM VLYNGCIWAS TRDRSYFVYC LYLAVFFLMN FSYNGFAFQY
FWPESPRWSN WSQTHWIFAF QGLAVLFTMN FLESKTRLPR MHRVLQAFLV VLVGSWIAVT
VSGDIVAYHA VPIYFIFGCA PLILAAGFLA LRPGYRAARF FVLAFVASIT GSFFTALTVS
GLIPYTFANF HASEFGLLAD MVLLSQALAD RVKLLSEQRD AAELREIEQK IATTALLKQA
NEDLERMVLE RTSELARARD EAEHFARIDM LTGVANRRYF EEVATMEFAR TQRGQQALSV
ILIDIDLFKQ VNDRYGHAAG DAVIRAVARL AKESVRESDF VARIGGEEFS VLLPGIGQAP
AFATAERLRE RIAACVVEHD GHSLGFTASF GVSEQVADDP GFSSLLRRAD QALYAAKQAG
RNQVVVQALE WG