| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_2058 |
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| Symbol | |
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| ID | 4691853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | - |
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| Start bp | 2336437 |
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| End bp | 2338344 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639849822 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_996826 |
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| Protein GI | 121609019 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.704789 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0381419 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATCA GCAAGGCCAA GGAACGCGCG CTGATGAAGG AGTTCGGCCT GGACGAGACC
GTTCTGTCCG AGGAAGACCT GGCCCGGCGC CGTTCGCGCC TGAAGACCCT GATCAAACTG
GGCAAGACGC GCGGCTACCT GACCCATGTC GAGATTTCCG ACCACTTGCC CGACAAACTG
GTCGATGCCG AAACGCTGGA AGCCGTCATC ACCACGCTGA ACGACCTGGG CGTGGCCGTC
TACGAGCAAA CGCCCGATGC CGAAGCGCTG ATCATTACCG ACAATGCCCC CACCGGCGCC
AGCGAAGAAG AGGCCGAAGA GGCCGCCGAA GCGGCCCTGT CTACCGTCGA CAGCGAGTTC
GGCCGCACCA CCGACCCGGT GCGCATGTAC ATGCGCGAGA TGGGCACCGT GGAACTGCTC
ACGCGCGAAG GCGAGATCGA AATCGCCAAA CGCATCGAAG GCGGCCTGAT GGCGATGATG
GAGGCGATCA GCGCGTCGCC AGCCACCATC GCCGAAATAC TGAACATGGG CGAGGAAATC
CGCGCAGGCA AGGTCGTGAT CTCGACCATC GTCGATGGCT TTTCCAACCC CAACGAGGCC
GACGACTACG TGGCCGAAGA AGACTTCGAC GAATTTGACG AAGCCGATGA CGACGACGGC
AAGGGCGGCT CCAAGGCGCT GACCAAAAAG CTCGAAGAAC TCAAAAAGCA GGCCCTGGAA
CGCTTTGACA AACTGCGCGA TCTGTTCGAG AAAATGCACA AGGTCTACGA CAAGGACGGC
TACGGCACGC TGGCCTACGT GCAGGCCCAG CAAGCCCTGT CGGCCGAGCT GATGACCATA
CGCTTTACCG CCAAGACCAT CGAAAAACTG TGCGACATGG TGCGCGGCCA GGTCGATGAT
GTGCGCCGGA AAGAACGCGA GCTGCGCCGC ATCATCGTGG ACAAATGCGG CATGCCGCAG
GAAACCTTCA TCAAGGATTT CCCGCCCAAC CTGCTGAACC TGCAATGGGT GGAAAAGCAG
GCGGCCATGG GCAAGCCCTG GTCTTCGATC ATTGCGCGCA ACATCCCGCC GATCCAGGAT
TTGCAGCAAA AGCTGATGGA CTTGCAGTCG CGCGTGGTGG TGCCGCTGAC CGAGCTCAAG
GTCATCAACA AGCGCATGAA TGAAGGCGAG GCCACCTCGC GCGATGCCAA AAAGGAAATG
ATCGAGGCCA ACCTGCGCCT GGTGATCTCG ATTGCCAAGA AGTACACCAA CCGTGGCCTG
CAATTCCTGG ACCTGATACA GGAGGGCAAC ATCGGCCTGA TGAAGGCCGT GGACAAATTC
GAATACCGCC GCGGCTACAA ATTCTCGACC TATGCCACCT GGTGGATCCG CCAGGCCATC
ACGCGCTCGA TCGCCGACCA GGCGCGCACC ATCCGCATCC CGGTGCACAT GATAGAGACC
ATCAACAAGA TGAACCGCAT CAGCCGCCAG CACTTGCAGG AGTTCGGCTT CGAGCCCGAT
GCCTCGCTGC TGGCCGCCAA AATGGAGATA CCCGAGGACA AGATCCGCAA GATCATGAAG
ATCGCCAAAG AACCGATCTC GATGGAAACC CCGATCGGGG ACGACGACGA CAGCCACCTG
GGCGATTTCA TCGAGGACGC GAGCAACACC GCCCCGATAG AAGCCGCGAT GCAGGCCGGC
CTGCGCGACG TGGTCAAGGA CATCCTCGAC GGCCTGACGC CGCGCGAAGC CAAGGTGCTG
CGGATGCGCT TCGGCATCGA GATGACCAGC GACCACACGC TGGAAGAAGT GGGCAAGCAA
TTTGACGTGA CGCGCGAGCG CATCCGCCAG ATAGAAGCCA AGGCGCTGCG CAAGCTCAAG
CACCCGAGCC GTTCGGACAA GTTGCGCAGC TTCATCGACT CGATATAG
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| Protein sequence | MKISKAKERA LMKEFGLDET VLSEEDLARR RSRLKTLIKL GKTRGYLTHV EISDHLPDKL
VDAETLEAVI TTLNDLGVAV YEQTPDAEAL IITDNAPTGA SEEEAEEAAE AALSTVDSEF
GRTTDPVRMY MREMGTVELL TREGEIEIAK RIEGGLMAMM EAISASPATI AEILNMGEEI
RAGKVVISTI VDGFSNPNEA DDYVAEEDFD EFDEADDDDG KGGSKALTKK LEELKKQALE
RFDKLRDLFE KMHKVYDKDG YGTLAYVQAQ QALSAELMTI RFTAKTIEKL CDMVRGQVDD
VRRKERELRR IIVDKCGMPQ ETFIKDFPPN LLNLQWVEKQ AAMGKPWSSI IARNIPPIQD
LQQKLMDLQS RVVVPLTELK VINKRMNEGE ATSRDAKKEM IEANLRLVIS IAKKYTNRGL
QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET
INKMNRISRQ HLQEFGFEPD ASLLAAKMEI PEDKIRKIMK IAKEPISMET PIGDDDDSHL
GDFIEDASNT APIEAAMQAG LRDVVKDILD GLTPREAKVL RMRFGIEMTS DHTLEEVGKQ
FDVTRERIRQ IEAKALRKLK HPSRSDKLRS FIDSI
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