| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_1942 |
|---|
| Symbol | |
|---|
| ID | 4690725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 2177073 |
|---|
| End bp | 2178674 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639849709 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_996713 |
|---|
| Protein GI | 121608906 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAGCA TGACAGAGTT TGACTACATC GTGATCGGCG CCGGCTCCGC CGGCTGCATC
CTCGCCGACC GGCTCACGGA AAGCGGCCAG CACCGCGTGC TCCTGCTCGA AGCCGGCGCC
GCCGACCGCT CCCTGTGGCT GCGCATGCCA CTGGGCTTCG CCAAGCTCTA CCAGCACCCC
AAATACAACT GGCGCTACAG CACCACCCCC CAGGCAGAGT TAGCCAACCA GCAGGTCTAC
ACCCCGCGCG GCAAAGTGCT CGGCGGCTCC GGCGCCATCA ACGCCCTGGT CTACGTGCGC
GGCCAGGCCG GCGACTTCGA CGACTGGGCC GCGCAAGGCA ACCCCGGCTG GGCCTACGAC
GACCTGCTGC CCTGGTTCAA ACGGCTGGAA TCACACCCCC TGGGCGACAC CTGCTGGCAC
AGCAGCAGCG GCAAAATCCG CATCACCCGC GACCCCGTGC ACCCCATTTG CCAAGCCTTC
TTCGCCGCCT GCGCCAGCCT CGGCTACGCC AGCAACGACG ACTTCAACGG CGCCCAATTG
GGCGGCTACG GCACCTACGA CATCAACACC CGCGACGGCC GCCGCGACTC CTCGGCCAGC
GCCTACCTGC ACCCCGCCAT GCGGCGCCAC AACCTGACCG TCAAAACCCG GGCGCTGGCC
GAACGCATCC TGTTCGACGA ACAGCGCCGC GCCAGCGGCG TCGACGTGCT CATCGGCGGA
CAGCGCCAGC GCTTTGTCGC ACGGCGCGAA ATCATCCTGT CCGCCGGCGC CGTCGCCAGC
CCGCAACTGC TGCAACTGTC CGGCATCGGC GACGGCGCGC TGCTGCAACG CCACCAGATC
CCCCTCATCC ACCACGCCCC CGCAGTAGGC CGCAAGCTGC AAGACCACCT GTGCACGTCC
TTTTATTTCC GCGCCAACCG CCCGACCATG AACGACCAGA TCCGGCACCC CTGGCAACAG
GCGCGCGCCG CGCTGCAATA CTGGGTCAAA CGCCGCGGCC TGCTCGCCAC CACCGTCAAG
GCCGGCGGAT TTTTCAGCAG CGCCGGGCCG GACGGGCCGC TGGACATGCA GCTCTACTTC
AACCCCCTGT CCTACACCCT GCCGGACAAC GGCGGCACCC CGCGCATCCA GCCCTACTCC
GGCTACACCC TGTTCTTTTC CCCCTGCCGA CCAAGCAGCC GCGGCAGCAT ACAAATCAGC
AGCGCCGACA TCCACAGCGC CCCGCACATC GACCCCAACT ACCTGGCCAC CGAACAAGAC
CGCCACACCG CCATCGCCGG CGCCCGCCTG CTGCGCCGCC TGGCCGCCAC CCCGGCGCTG
ACCCAGGTCA CCGCCGAGCA AACCGCGCCA CGGCCCAACG GCGACGACGA CGCCAGCCTG
CTGCAATTCG TGCGCGAACA AAGCGGCTCG GTCTACCACC TGTGCGGCAG TTGCGCAATG
GGGCGCGACG GCGTGGTCAA CAGCCAACTG CAAGTGCACG GCGTGACCGC GCTGCGCGTG
GTTGATGCTT CGGTCTTTCC CAACATCACC TCCGGCAACA TCAATGCGCC GACCATGATG
GTGGCGGAGA GGGCGGCGGG GTTGGTGCTG GATGCGGGCT GA
|
|---|
| Protein sequence | MGSMTEFDYI VIGAGSAGCI LADRLTESGQ HRVLLLEAGA ADRSLWLRMP LGFAKLYQHP
KYNWRYSTTP QAELANQQVY TPRGKVLGGS GAINALVYVR GQAGDFDDWA AQGNPGWAYD
DLLPWFKRLE SHPLGDTCWH SSSGKIRITR DPVHPICQAF FAACASLGYA SNDDFNGAQL
GGYGTYDINT RDGRRDSSAS AYLHPAMRRH NLTVKTRALA ERILFDEQRR ASGVDVLIGG
QRQRFVARRE IILSAGAVAS PQLLQLSGIG DGALLQRHQI PLIHHAPAVG RKLQDHLCTS
FYFRANRPTM NDQIRHPWQQ ARAALQYWVK RRGLLATTVK AGGFFSSAGP DGPLDMQLYF
NPLSYTLPDN GGTPRIQPYS GYTLFFSPCR PSSRGSIQIS SADIHSAPHI DPNYLATEQD
RHTAIAGARL LRRLAATPAL TQVTAEQTAP RPNGDDDASL LQFVREQSGS VYHLCGSCAM
GRDGVVNSQL QVHGVTALRV VDASVFPNIT SGNINAPTMM VAERAAGLVL DAG
|
|---|
| |