| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_1543 |
|---|
| Symbol | |
|---|
| ID | 4691887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 1729384 |
|---|
| End bp | 1730178 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639849307 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_996320 |
|---|
| Protein GI | 121608513 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.174078 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0303044 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG CCCGGCCGCC CGAAGGCGCT CATACCGCAG CCGAAGGCAC CCCGGTGCGC
GCTGCCGACA ACGCCCAGGA AGGCGCCGTG CTCGTGACCG GCGCCAGCCG TGGCATCGGT
CGCGCCGTGG CGGCGCGCCT GATGGCCGAC GGCCTGCAGG TGCTCAACTA CGACATCGTC
CCCCCGGTCG CGCTGGGCGC GCGCGAAACT TTCGTGCCGG TGGATCTGGC CGACGAGCGC
GCGCTGCGCG CCGCCCTGGC ACGCACCGTG GCCGAACGGC CGGTCACGCG CCTGGTGAAC
AACGCCGGTG TCGTGCGCCC GGCAACCATC GATGCCGTCA CCAGCGCCGA CCTGCAGGCC
GTGATGGCCG TCAACGTGGC TGCGGCCATC CTCTGCGTGC AGGCGCTGCT GCCGGCCATG
CGCGCAGCGC GCTTTGGGCG CATCGTCAAT ATCTCCAGCC GCGCCGCGCT GGGCAAGGCC
GAGCGCATTG CCTACGCGGC CAGCAAGGCC GCGGTGCACG GCTACACGCG CGCGCTGGCC
CTGGAATTGG CCGCCGACGG CATCACCGTC AACGCCATCG GCCCCGGCCC CATTGCCACC
GAACTCTTCG AGCGCGTGAA CCCGCCCGGC GCGCCTGCGA CGCAGCGCAT TCTCGACACC
ATCCCGCTGC GCCGCATGGG GCATCCCGAC GACATAGCGC ACCAGGTCGC CTCGCTGCTC
GATGCGCGCG CGGGCTTTAC CACCGGCCAG GTGCTGTATG TCTGCGGTGG CATGACGGTG
GGGCTTGCGC CCTGA
|
|---|
| Protein sequence | MSAARPPEGA HTAAEGTPVR AADNAQEGAV LVTGASRGIG RAVAARLMAD GLQVLNYDIV
PPVALGARET FVPVDLADER ALRAALARTV AERPVTRLVN NAGVVRPATI DAVTSADLQA
VMAVNVAAAI LCVQALLPAM RAARFGRIVN ISSRAALGKA ERIAYAASKA AVHGYTRALA
LELAADGITV NAIGPGPIAT ELFERVNPPG APATQRILDT IPLRRMGHPD DIAHQVASLL
DARAGFTTGQ VLYVCGGMTV GLAP
|
|---|
| |