Gene Veis_1344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVeis_1344 
Symbol 
ID4692674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVerminephrobacter eiseniae EF01-2 
KingdomBacteria 
Replicon accessionNC_008786 
Strand
Start bp1493403 
End bp1495913 
Gene Length2511 bp 
Protein Length836 aa 
Translation table11 
GC content71% 
IMG OID639849115 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_996129 
Protein GI121608322 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.492796 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0418259 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACCG CCGCCATCTT GTGGGTGGAC TGCGACACGC AGCATGCGGC CGCAGCGCAG 
CAATTGATCA GCGCGCAGCA CCCGGGCTGG CGCCTGCTGC ACAGCCCCGC GCCCGGGCAG
GCCAGCCGGG CCTGGGACGC GATGGTGCTG TGCCTGGACC CGGCAGCCCG GGAACTGCCC
GATCTGCGCG AACCATGCGC CACCCACCCG GTGCTGCTGT GCCTGGACGC CGCGCAAGAA
GCCCTGGCCG CGCGCGCCTT CCGCGACGGG CTGGGCGACT ATCTGCTGCG GGCTGCGGAT
GGCCAGGCCC ATCTGGCTGA ACTGATGCAG CGCCTGGCCG CGCTGCTGCG ACAGCGCCTG
GCCGCGCAGG CGCCCGGCGC CCCGAACCCG TCGGCGCGCA TGTTGGCGCT GCTGCAAGAG
CAGCGCGCGG CCTTGCAAGC CACGCTGGCC AGCATCAGCC AAGGCATCTT CAAGACCGGG
CCGGACGGCC GCATCAGCGT CTACAACCAG CGCGCGCTGG ACCTGCTGGA CCTGCCCGAA
TCGCTGCTGG CCAACCGCCC CACGCTGGCC GAACTGACCC GCCTGCAGGC CGAGCGCGGC
GACTTTGGCC CCGACTACGG CCTGGTGGGC CCGCTCGGGC AGGACTACCT GGCCCAGGGC
GGCCGGGACT CGGCCCCGGC CATCTACTGG CGCACCACGC GCGATGGCCG CACGCTGGAG
GTGCGCACCA ATGCGCTGGC CGACGGCAGC CAGGTGCGCA CCTTTGCCGA TGTCAGCGAC
TACCTGCGCG TGGAAAACCA ACTGCGCGAC AGCGAGGCGC GCTTTCGCTC GCTGAGCGAC
CTGTCGTCCG ACTGGTACTG GGAGCACGAC GCGCAGGGCC GCTTCACCCA ACTGGCCGGC
GACCTGAGCG TCAACGGCAT GCCGCTATCG GCCGTGCTCG GGCGCACGCG CTGGGAGATC
GGCGCACTGA ACATGACCGA GGCCGACTGG GCCGCGCACC GCGCCGTGCT GGCCGCGCAG
CAACCGTTTC GCGACCTGGA GCTGCAACGC CGGCGCGCCG ATGGCAGCAT GCACTGGATC
AGCGTCAGCG GCGTGCCGGT GCAGGGCGCC GACGGCACAC CGCGCGGCTA CCGGGGCGTG
GGCCGCGACA TCACCGGACG CAAACAGGCC GAGGGCCAGA TCGAACGCCT GGCGTTCTAC
GACGCGCTGA CCGGCCTGCC CAACCGGCGC CTGCTGCTCG ACCGCCTGCA GCACGCCACG
GTGGCGGTCA CGCGCTCGAA CACCCAGGGC GCGCTGCTGT TCATCGACCT GGACAACTTC
AAAAGCCTCA ACGACACCCT GGGCCACGAC GCCGGCGACC ACCTGCTGCA GCAGGCGGCG
CAGCGCCTGA AAGCCTGTGT GCGCGAGGTC GACACGGTGG CCCGCTTCGG CGGCGACGAA
TTCGTGGTGC TGCTCGCCGG GCTGAGCGCC GCTGCGGCCC AGGCCAGCGC CGAAGCCGCG
CAGGTGGCCA AGCACATCGC CGCCAGCCTG GGCCAGCCCT ATGCGCTGGG CGGGGCCGTC
CACCACAGCA CGCCGAGCAT CGGCATCGCG CTGTTCGGCC CGCAGGCTTG CCGCGTGGAC
GAACTGCTCA AACAGGCCGA CCTGGCGATG TACCAGGCCA AGGCCGCAGG GCGCAACACC
CAGCGCTTTT TCGACCCCGA GATGCAGGCC GCCGCCAGCC ACCGCAGCGC GCTGGAGGCC
GACCTGCGCC GGGGCCTGCA ACAGCGGGAA CTGGTGCTGC ACTACCAGCC CATGGTCGAT
GGCCAGGGCC GCCTGCAAGG CGCCGAAGCC CTGGTGCGCT GGAACCACCC GCAGCGGGGG
CTGATGCCGC CGGCCGAATT CACCCCGCTG GCCGAGCAAA CGGGCCTGAT CCTGCCGCTG
GGCCAATGGG TGTTGGAGAC CGCCTGCGCA CAGTTGGTGG CCTGGTCGCG CAGCGCGCTC
ACGCGGGCGT TCTCCCTGTC GGTGAACGTC AGCGTGCGGC AGTTCCGCCA GGCCGATTTC
GTGCAGCAGT TGCTGGCCAC GCTGGAGGCC AGCGGCGCCA ACCCCGAGCG CCTGACCATA
GAGCTCACCG AAAGCCTGCT GCTGAACGAC GTGCAGGACA TCATCGCGCG CATGCAGCAA
CTGCGCTGCC ACGGCCTGGG CTTCGCGCTC GACGACTTCG GCACCGGCTA CTCGTCGCTG
AGCCAGCTCA AACGCCTGCC GCTGGACCAG ATCAAGATCG ACCGCAGCTT TGTGCGCGAC
CTGCCCGCCG ACGCCGGCGA CGGCGCCATC GTGCGCAGCA TCCTGGCCCT GGCCCAGAGC
CTGGGCCTGG CCGTGGTGGC CGAAGGGGTG GAGACCCGGG CGCAACTGGA GTTTTTGCAG
CACCATGGCT GCCAGACATT CCAGGGCTAC CACTTCGGCC GCCCGATGCC GCCCGAAGCG
CTGGCGCACA GGTTTCAGGT AGTGCCTGAC CCCCTCGGCA GACCCGTCTG A
 
Protein sequence
MKTAAILWVD CDTQHAAAAQ QLISAQHPGW RLLHSPAPGQ ASRAWDAMVL CLDPAARELP 
DLREPCATHP VLLCLDAAQE ALAARAFRDG LGDYLLRAAD GQAHLAELMQ RLAALLRQRL
AAQAPGAPNP SARMLALLQE QRAALQATLA SISQGIFKTG PDGRISVYNQ RALDLLDLPE
SLLANRPTLA ELTRLQAERG DFGPDYGLVG PLGQDYLAQG GRDSAPAIYW RTTRDGRTLE
VRTNALADGS QVRTFADVSD YLRVENQLRD SEARFRSLSD LSSDWYWEHD AQGRFTQLAG
DLSVNGMPLS AVLGRTRWEI GALNMTEADW AAHRAVLAAQ QPFRDLELQR RRADGSMHWI
SVSGVPVQGA DGTPRGYRGV GRDITGRKQA EGQIERLAFY DALTGLPNRR LLLDRLQHAT
VAVTRSNTQG ALLFIDLDNF KSLNDTLGHD AGDHLLQQAA QRLKACVREV DTVARFGGDE
FVVLLAGLSA AAAQASAEAA QVAKHIAASL GQPYALGGAV HHSTPSIGIA LFGPQACRVD
ELLKQADLAM YQAKAAGRNT QRFFDPEMQA AASHRSALEA DLRRGLQQRE LVLHYQPMVD
GQGRLQGAEA LVRWNHPQRG LMPPAEFTPL AEQTGLILPL GQWVLETACA QLVAWSRSAL
TRAFSLSVNV SVRQFRQADF VQQLLATLEA SGANPERLTI ELTESLLLND VQDIIARMQQ
LRCHGLGFAL DDFGTGYSSL SQLKRLPLDQ IKIDRSFVRD LPADAGDGAI VRSILALAQS
LGLAVVAEGV ETRAQLEFLQ HHGCQTFQGY HFGRPMPPEA LAHRFQVVPD PLGRPV