| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_1264 |
|---|
| Symbol | rplC |
|---|
| ID | 4695320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | + |
|---|
| Start bp | 1405974 |
|---|
| End bp | 1406648 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639849036 |
|---|
| Product | 50S ribosomal protein L3 |
|---|
| Protein accession | YP_996050 |
|---|
| Protein GI | 121608243 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0087] Ribosomal protein L3 |
|---|
| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00436289 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGA GCAACTCCCT CGGGTTGCTG GGTCGCAAAG TGGGCATGAT GCGTCTGTTC
ACCGATGATG GGGACGCAGT GCCTGTCACG GTGGTCGATG TGTCCGACAA CCGCGTGACC
CAGGTCAAAA CCCAAGAGAA CGACGGCTAT GTCGCCTTGC AGGTCACGTT CGGTGCGCGC
AAGGCCTCGC GCGTGAGCAA GCCCGAAGCC GGCCACCTTG CCAAGGCAGG GGTGCAAGCC
GGAGAGATCA TCCAGGAATT TCGCGTCAGC GCCGATACCG CCGCCCAGTA CCAGGCGGGC
GCATCGGTGG CGATAACGTC GGTGTTTTCC GTGGGCCAGA AGGTCGATGT GCAAGGCACC
TCGATCGGCA AGGGCTATGC CGGCACCATC AAGCGCCACA ACATGCGGTC GCAGCGCGCC
TCGCACGGCA ACAGCCGTTC GCACAACGTG CCCGGCTCGA TCGGCATGGC GCAGGACCCG
GGCCGCGTGT TCCCCGGCAA GCGGATGACG GGCCACCTCG GCGATGCCAC CCGGACCACG
CAAAATCTCG ACCTGATCCG CATCGACGAA GCGCGGCAAC TGCTGTTGAT CAAGGGCGCC
ATCCCGGGCT CCAAGGGCGG GTTCGTGACG GTGCGTCCGG CCGTCCGGAG CCAGGCTGCG
AAAGGAGCGA ACTGA
|
|---|
| Protein sequence | MSLSNSLGLL GRKVGMMRLF TDDGDAVPVT VVDVSDNRVT QVKTQENDGY VALQVTFGAR
KASRVSKPEA GHLAKAGVQA GEIIQEFRVS ADTAAQYQAG ASVAITSVFS VGQKVDVQGT
SIGKGYAGTI KRHNMRSQRA SHGNSRSHNV PGSIGMAQDP GRVFPGKRMT GHLGDATRTT
QNLDLIRIDE ARQLLLIKGA IPGSKGGFVT VRPAVRSQAA KGAN
|
|---|
| |