| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_0651 |
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| Symbol | prpD |
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| ID | 4693435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | - |
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| Start bp | 730619 |
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| End bp | 732076 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639848428 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_995452 |
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| Protein GI | 121607645 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.144324 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCCCC TCAGCAATAA CGACCGCCCT GCTCCGGACG CGGTACTGGT TGACATCGCC
AACTATGTGC TCGATTACCG GGTCGATAGC GCGCTGGCCT ATGAGACGGC GCGCCACTGC
CTGATCGACA CGCTCGGCTG CGGGCTGGCG GCGCTGGAAT ATCCGGCCTG CACCCGACTG
CTCGGCCCGA TCGTGCCCGG CACCATCGTC CCCCACGGCG CGCGCGTGCC GGGAACGCCC
TATCAGCTCG ATCCGGTGCA GGCGGCTTTT GACATTGGCA CGATGATCCG TTGGCTCGAT
TTCAACGATT GCTGGCTGGC GGCCGAATGG GGGCATCCAT CGGACAATCT CGGCGCCATC
CTGGCGGTGG CCGACTGGCG CTCGCGCACG GCCGTCGCAG CGGGCCGCGC GCCGATGACG
ATGCGCCAGG TCCTGACGGC GATGATCAAG GCCCATGAGA TCCAAGGCTG TCTGGCGCTG
GAAAATGCGT TCAACCGGGT CGGCATCGAC CATGTGATTT TGGTCAAACT GGCCTCGACG
GCCGTGGTCG GCGCGCTGCT GGGCTTGGCG CGCGACGAGA TCATCAACGC GCTGTCGCTG
GTCTTCGTCG ATGGCCAGGC GCTGCGGACC TACCGGCATG CGCCCAACAC CGGCTCGCGC
AAAAGCTGGG CGGCCGGGGA TGCCTGCAGC CGCGCAGTCA GGCTGGCGCT GATCGCACAA
AGCGGCGAGA TGGGCTACCC ATCGGCGCTG ACGGCCAGGC ACTGGGGCTT TTATGACGCA
TCGTTTCGCG GCCAGCCGTT CCGATTTCAG CGCCCCTATG GCAGCTATGT GATGGAGCAT
GTGCTGTTCA AGATTTCCTG GCCGGCGGAA TTTCACGCCC AAACCGCTGT CGAGGCCGCG
CTGGCGCTGC ACCAGCGTCT GCGCGCCATG GGCCGCAGCA GCGACGATAT CGCCTCGGTC
CGGGTTCGCA CCCATGAGGC TTGCATCCGC ATCATCGACA AGCACGGGCC GCTGCATAAC
CCGGCCGACC GCGACCATGC GCTGCAATAC ATGGTGGCGG TGCCGCTGAT CTTCGGGCGC
CTGACGGCCG ACGACTATGA GGACGCAGTG GCCGCCGACC CGCGCATCGA TGCGCTGCGG
GCCAAGATCG AATGCGTCGA GGAGCCAGCC TTCACGCGCG ACTACCATGA CCCGGACCAA
CGCGCCATCA CCAACGCGCT GACGATCACA CTGACCGACG GCAGCCGCTT GCCCGAATCG
CTGGTGGCCT ATCCGATCGG CCACCAGCGC CGGCGCGCCG AGGGCCTGCC GCTGCTCGAA
GCCAAGTTCC GCGCCCATCT GGCGCTGCGC CTGGCAGCCG AGCGCCAGCA GCAAATCCTG
CAAGTCTCGC TCGACCAGGA ACGGCTGGAG GCAATGGCGG TGCATGACTA TGTCGATCTC
TATGCCAGCC CGGTGTGA
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| Protein sequence | MAPLSNNDRP APDAVLVDIA NYVLDYRVDS ALAYETARHC LIDTLGCGLA ALEYPACTRL
LGPIVPGTIV PHGARVPGTP YQLDPVQAAF DIGTMIRWLD FNDCWLAAEW GHPSDNLGAI
LAVADWRSRT AVAAGRAPMT MRQVLTAMIK AHEIQGCLAL ENAFNRVGID HVILVKLAST
AVVGALLGLA RDEIINALSL VFVDGQALRT YRHAPNTGSR KSWAAGDACS RAVRLALIAQ
SGEMGYPSAL TARHWGFYDA SFRGQPFRFQ RPYGSYVMEH VLFKISWPAE FHAQTAVEAA
LALHQRLRAM GRSSDDIASV RVRTHEACIR IIDKHGPLHN PADRDHALQY MVAVPLIFGR
LTADDYEDAV AADPRIDALR AKIECVEEPA FTRDYHDPDQ RAITNALTIT LTDGSRLPES
LVAYPIGHQR RRAEGLPLLE AKFRAHLALR LAAERQQQIL QVSLDQERLE AMAVHDYVDL
YASPV
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