Gene Veis_0220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVeis_0220 
Symbol 
ID4692693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVerminephrobacter eiseniae EF01-2 
KingdomBacteria 
Replicon accessionNC_008786 
Strand
Start bp241008 
End bp242807 
Gene Length1800 bp 
Protein Length599 aa 
Translation table11 
GC content65% 
IMG OID639848005 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_995030 
Protein GI121607223 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.205881 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCATCG TCCCGATGTC TTTGCCGAAG ACAGGGGTGC TTGAAAGCCA TCAAATCATG 
TCCGCCATGG AGACACCAAA GACAGGTTCG AGCAGCACCG CCCTGCATGC ATTGCGCGGC
GTGTTGGTCT TGGGCGCGGA TGGCAAAGCG ATGGCCACCA ATGGCATTGC ACTGCAACCT
GCGGTGGCCC GTTGCATCCT TGCCGCATGG CATGAAGCCC GCCGGCGCCA GCGCAAGGTC
TTTCCCGCCG AGACGCCGGA CGGCGCGCCG ATCGTGGTGG TGGCCCTGCC GGCGGCAGAC
GCCACGGTGC TGGTCGCGAT GGAGCGCGAC AGCCGCGACG CGCTCTTCGA GTTCGTTGGT
GCCGTCGATT TCGCGGCCGA CATCCTGGCG CACTTCCTGA CCAATCCGTT TGAGGCCTTG
AGCGTCGTCG ATCGGCAGGG CATCGTCCGC TACATGAGCC CGGTGCACGA ACGCTTCTTC
GGCCTGCCGC CGGGCGGCGG CACCGGCCGC CATGCCACCG AAGTGATCGA GAACTCGCGG
CTGCACCATG TGGTCGCCTC CGGCAAGGCA GAGATCGGTT TGCTGCACGA AATGCGCGCC
ATCACCCGCG TGGTATCGCG CCACCCGATC CGCAACCGCC ACGGGGATAT CGTCGGCGCG
ATCGGGCAGA TCATGTTCAA AGGGCCGGAG CAACTGCAGG CATTGTCTGC CGAACTATCG
AAGCTCAAGT CCGAAGTCGC TTATTACCGG CGCGAGCTCA GCGACCTGCG CAACCGCAGC
TACGGCCTCG ATCAAATCCT GGGCAACAGC CCGGCGATGC AACGCCTCAA GCAGCAGATC
GTCAAGCTCG CGCCGCTGGA CGTTCCGGTG CTGCTGACCG GCGAAAGCGG CACCGGCAAG
GAGCTTGCAG CCCATGCGAT CCACAAGCTC AGCCCCCGGC GCGATGACAC GTTGGTGATG
GTCAACGCTG CCGCCCTGCC TGCCACGCTG GTTGAAAGCG AGCTTTTTGG CTACGAGGCC
GGCTCCTTCA CCGGGGCCGA GCGCAAGGGT CGCAAGGGCA AGATCGAGCA GGCCGATGGC
GGCTCACTGT TCTTCGATGA GGTCGGAGAC ATGCCGGCGG ATGTGCAGGT CAAGCTGTTG
CGCGTGCTGC AAGATGGCAA CTTTCAGCGC GTGGGCGGCA ACGAACTGCG CCACTCCAAC
TTCCGCCTCA TCAGCGCCAG CAACCGCGAC TTCGAGGCCA TGATCGCCAA CGGTTCGTTC
CGGCTGGACC TGTTTTACCG GATCGGCGGC GTGACCATCC GCATGCCCTC GCTGCGCGAG
CGGATCGAGG ACATTGCGCA ATTGGCGGAA CTGGCGCTCC GGCAGTTTGC CGAGCGGCAC
CGGCAACGCC CGAAAAAGCT CTCGGACGCG GCCTGCGAGT TCCTGCAAAA CCAGCGCTGG
CCGGGCAATG TGCGGCAGTT GATGCACACC GTCGAGCGCG CGGCCATCTT CTGCGAATCC
GAGGTGGTCG TGCCAGCCGA CTTCGGGATC ATCGACGCCG ATCCGGCCGA ACTGCCGCCG
ATGCTGTCCG ACGGCGCAGG CCATGCCGCC CTGGCGTTGA CTGGCGCGGC GCCACGCGCG
TCACTGCGCG TCAGCAACGC GGTGGAACAA GTGGAAGAGC AACTGATTCG GCAGGCCATG
GCCCGGCTGC AAGGCAACAA GAAACGTGTC GCCGCCGAAC TGGGTATCTC ACGCTCCTAC
CTGTACAAGC GGCTGGCGCA AATCGGCCTG GGTGCCGCCA CCGGATCAGC GCTCAGTTGA
 
Protein sequence
MIIVPMSLPK TGVLESHQIM SAMETPKTGS SSTALHALRG VLVLGADGKA MATNGIALQP 
AVARCILAAW HEARRRQRKV FPAETPDGAP IVVVALPAAD ATVLVAMERD SRDALFEFVG
AVDFAADILA HFLTNPFEAL SVVDRQGIVR YMSPVHERFF GLPPGGGTGR HATEVIENSR
LHHVVASGKA EIGLLHEMRA ITRVVSRHPI RNRHGDIVGA IGQIMFKGPE QLQALSAELS
KLKSEVAYYR RELSDLRNRS YGLDQILGNS PAMQRLKQQI VKLAPLDVPV LLTGESGTGK
ELAAHAIHKL SPRRDDTLVM VNAAALPATL VESELFGYEA GSFTGAERKG RKGKIEQADG
GSLFFDEVGD MPADVQVKLL RVLQDGNFQR VGGNELRHSN FRLISASNRD FEAMIANGSF
RLDLFYRIGG VTIRMPSLRE RIEDIAQLAE LALRQFAERH RQRPKKLSDA ACEFLQNQRW
PGNVRQLMHT VERAAIFCES EVVVPADFGI IDADPAELPP MLSDGAGHAA LALTGAAPRA
SLRVSNAVEQ VEEQLIRQAM ARLQGNKKRV AAELGISRSY LYKRLAQIGL GAATGSALS