Gene Veis_0085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVeis_0085 
Symbol 
ID4694593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVerminephrobacter eiseniae EF01-2 
KingdomBacteria 
Replicon accessionNC_008786 
Strand
Start bp101730 
End bp103292 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content72% 
IMG OID639847871 
Productpseudouridine synthase 
Protein accessionYP_994896 
Protein GI121607089 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.300201 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGACA CGACCCCAGA CACTCCGGCA GCCGCTGCGC AGCCTGGCAG TGCCCCCGCG 
CACGCAGCGC GCGGCCAGGA AACAACGACG AGCACAGCGC GCGGCCAGGA AACAACGACG
AGCGCAGCGC AAGGCCAGGA AACGACACGC ACGGCGCCCG GCCAGGAAAC GGCATGTGCA
GCGCAAGGCC GGGAAACGCA CACGGCGCAC GACCCGCCAG CGGACACAGC CGCCACCCGG
CAACAAGCCG GGCCGCCGCT GGCCGCGGTC GACGGGCCGG CCGAGCCAAC GGCCGCCAGC
GCAGAGGCTG GCGCGCAACG CGAGCGTCAC CATCCGGCCG AACCCGGTGC CTCCAGGGGC
AGGCCGCGTC CCCCAGGCCC GCGCAGGCCG GCGGCGATTG CGGTCGAGGG CTATCGGCTG
GCCGATGTGG TATCGGGCCG GTTCGATGCC GACGATGCCG CGAGCGACCT GCCGCCCCCC
AAGCGGGTGC TGCTGCCGCA GGTGGAAACG CCCAAACTGC ACAAGGTGCT GGCCCAGGCC
GGGCTAGGCT CGCGGCTGGA GATGGAGCAG CTGATTCTGG AGGGGCGCAT CTCGGTGAAC
AACGAGCCGG CGCATATCGG GCAGCGGATA CAGTTCGGCG ACCAGGTCAA GGTCAACGGC
AAGCCGATTC GCTACCGCAT CGATCCGCCA CCGGCGCGTG TGATCGCCTA CCACAAGCCG
GTCGGCGAGG TCGTGTCGCA CGACGACCCG CACAACCGGC CGACCGTCTT TCGCAGGCTG
CCGCGCCTGG TGCAGGGCAA GTGGCAATCG GTGGGGCGGC TGGACCTGAA CACCGAAGGC
TTGCTGCTGC TGACCAGTTC CGGCGAACTG GCCAACCAGT TGATGCACCC GCGCTTCGGA
CTGGAGCGCG AGTACGCGGT GCGGGTCCTG GGCGCGCTGA GCAACGAAGA AAAGCAAAAA
CTGCTGGACG GCGTGCGGCT CGATGACGGC ATCGCATCTT TCGGCACCAT CGAAGATGGC
GGCGGGGAAG GCGCCAACTG CTGGTACCGG GTCACCATTG CCGAAGGGCG CAACCGTGAA
GTGCGCCGCA TGTTGGAAGC GGTCGGCCAT GCCGTCAGCC GCCTGATCCG CATCCGTTAC
GGCGCGATGG TATTGCCGCG CGGCCTCAAG CGCGGGACCT GGCTGGAGCT CGACGAGCGC
GACATCCGGG CACTGGCGCA GGCCGCTGGC GCGCGCGCGC CAGCACTGTC CACGCGCACG
CCGACGGATG CGCGCGCGGG CAAGCAGCGC GAGCGCAGCG GCCCCCCGAT GGGCAACGGG
CCGCGACGCG GCCGGTCGCC GCAGGGGCCT GCCGCCGGCG CGCGCGCGCA GAACCCGCGC
CGCGATGGCG GCGGGCAGGG CGTGGGGGCC GGTGGCAACC ATGCCGGCCC GCGCGCAGCG
GCCCAACCCG ACCCGATGCA GACCAGCGTG GGTTATATCG GTGGCGACAG CCTGTCCAGG
CTGCGCCAGA GCAAACGCCG CCCGGCAGGC GCGGGGCCTC GGCGCGGAGG CGGCGGGCGC
TGA
 
Protein sequence
MNDTTPDTPA AAAQPGSAPA HAARGQETTT STARGQETTT SAAQGQETTR TAPGQETACA 
AQGRETHTAH DPPADTAATR QQAGPPLAAV DGPAEPTAAS AEAGAQRERH HPAEPGASRG
RPRPPGPRRP AAIAVEGYRL ADVVSGRFDA DDAASDLPPP KRVLLPQVET PKLHKVLAQA
GLGSRLEMEQ LILEGRISVN NEPAHIGQRI QFGDQVKVNG KPIRYRIDPP PARVIAYHKP
VGEVVSHDDP HNRPTVFRRL PRLVQGKWQS VGRLDLNTEG LLLLTSSGEL ANQLMHPRFG
LEREYAVRVL GALSNEEKQK LLDGVRLDDG IASFGTIEDG GGEGANCWYR VTIAEGRNRE
VRRMLEAVGH AVSRLIRIRY GAMVLPRGLK RGTWLELDER DIRALAQAAG ARAPALSTRT
PTDARAGKQR ERSGPPMGNG PRRGRSPQGP AAGARAQNPR RDGGGQGVGA GGNHAGPRAA
AQPDPMQTSV GYIGGDSLSR LRQSKRRPAG AGPRRGGGGR