| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_0070 |
|---|
| Symbol | |
|---|
| ID | 4690595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | + |
|---|
| Start bp | 85661 |
|---|
| End bp | 86503 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639847856 |
|---|
| Product | squalene/phytoene synthase |
|---|
| Protein accession | YP_994881 |
|---|
| Protein GI | 121607074 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00181146 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCAC AGCAGTACGT GCAGCAAAAA GCCGTGGCCT CGGGCAGCAG TTTTTATTAC
GCCTTTTTGT TTCTGCCCGC GCCGCGCCGC GCGGCGATCA CGGCGTTTTA TGCGTTCTGC
CGGGAAGTCG ACGACGTGGT GGATAGCCAA ATGATCGACC CGGGCGTGGC CCGCACCAAG
CTGGCCTGGT GGCAGTCGGA AGTGGTCAAG GCCTACGCCG GCCAGCCCAG CCATCCGGTG
ATGCAGGCCC TGATGCCACA CACCGCCGAA TACGGCATTG CGCAGCGCCA CTTGCAGGCC
GTGATCGACG GCTGCCGGAT GGACCTGGAG CAAACCCGCT ACCTCGACAT TGCGGGCCTG
ACCGGCTATT GCCACTTGGT GGCGGGCATC GTGGGCGAGG TCACGGCGCG CATCTTCGGC
CAGACCGACG AGCGCACCAC GCAGTACGCA CACATGCTGG GGCTGGCGTT CCAGTTCACC
AACATCATCC GCGACGTGGG CGAAGACGCG CTGCTGGGCC GCGTCTACCT GCCGCTGAGC
GAGTTGCAGC AATTCGGCGT GAAGGTGCAC GAACTGCTCG AGCGCCGGTA TTCCGACCGC
TTCACCGCGC TGATGCGCTT TCAGGCCGAG CGCGCGCACC GCCTGTACGA CCAGGCCCTG
GCCCTGCTGC CCGAGGTCGA CCGGCGCGCG CAAAAGCCCG GCCTGATGAT GGCCAGCATC
TACCGCACGC TGCTGCGCGA GATCGGGCAT GAGAACTTCC AGGTGCTGCA CCAGCGCATC
CGCCTGACAC CGCTGCGCAA GTTCTGGCTG GCGTGGAAGG TGCAGGCGCT GGGGCGCATG
TAA
|
|---|
| Protein sequence | MTPQQYVQQK AVASGSSFYY AFLFLPAPRR AAITAFYAFC REVDDVVDSQ MIDPGVARTK
LAWWQSEVVK AYAGQPSHPV MQALMPHTAE YGIAQRHLQA VIDGCRMDLE QTRYLDIAGL
TGYCHLVAGI VGEVTARIFG QTDERTTQYA HMLGLAFQFT NIIRDVGEDA LLGRVYLPLS
ELQQFGVKVH ELLERRYSDR FTALMRFQAE RAHRLYDQAL ALLPEVDRRA QKPGLMMASI
YRTLLREIGH ENFQVLHQRI RLTPLRKFWL AWKVQALGRM
|
|---|
| |