Gene BMASAVP1_A2946 details

Gene Information

• Locus tag: BMASAVP1_A2946
• Symbol: fliF
• ID: 4678879
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei SAVP1
• Kingdom: Bacteria
• Replicon accession: NC_008785
• Strand: -
• Start bp: 2931004
• End bp: 2932800
• Gene Length: 1797 bp
• Protein Length: 598 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 639847204
• Product: flagellar MS-ring protein
• Protein accession: YP_994240
• Protein GI: 121601133
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.945796
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACTCGC AGGCCAACTC GCTGATCAAC CCCGACGCCC GTTCGAGCCT TGCGGGCGCA 
TCGCCGCAAG CCGCGGCCGC GGCGGGCGCG CTGCCGGGCG CGGCGGCGGG CGGCGCGGAT 
TTCGGCCTGG GCGGCTTCGC CGAACGCATC CCGGGCCTCT CGCGAATGAA GACGAACCCG 
CGGCTGCCGT TCCTGATCGG CGCGGCGCTC GCCATCGCCG CGATCGTCGC GCTCGTGCTC 
TGGAGCCGCG CGCCCGACTA CCGCGTGCTG TACAGCAACC TGTCCGACCG CGACGGCGGC 
GCGATCATCG CCGCGCTCCA GCAGGCAAAC GTTCCCTATA AGTTCGCCGA CGCGGGCGGC 
GCGATCCTCG TGCCCGCGAA CCAGGTGCAC GAGACGCGCC TGAAGCTCGC CGCGATGGGG 
CTGCCCAAGG GCGGCTCGGT CGGCTTCGAG CTGATGGACA ACCAGAAATT CGGCATCAGC 
CAGTTCGCCG AGCAGGTCAA CTACCAGCGC GCGCTCGAGG GCGAGCTGCA GCGCACCGTC 
GAATCGAGCA ACGCGGTGCG CGCCGCGCGC GTGTATCTGG CGATTCCGAA GCCTTCGGTA 
TTCGTGCGCG ATCGCGAGGC GCCGTCGGCG TCGGTGCTCG TCGATCTGTA CCCGGGCCGC 
GTGCTCGACG AAGGGCAGGT GCTCGCCGTC ACGCGCATGG TGTCGTCGAG CGTGCCCGAC 
ATGCCCGCGA AGAACGTGAC GATCGTCGAC CAGGACGGCA ACCTGCTCAC GCAGACCGCG 
TCCGCCACCG GCCTCGACGC GAGCCAGCTC AAGTACGTGC AGCAGATCGA GCGCAACACG 
CAAAAGCGCA TCGACGCGAT CCTCGCGCCG ATCTTCGGCG CCGGCAACGC GCGCTCGCAG 
GTGAGCGCCG ACGTCGACTT CTCGAAGATC GAGCAGACCT CGGAGAGCTA CGGCCCGAAC 
GGCACGCCGC AGCAGAGCGC GATCCGCAGC CAGCAGACGA GCAGTTCGAC CGAGCTCGCG 
CAAAGCGGCG CGTCGGGCGT GCCGGGCGCG CTGTCGAACA CGCCGCCGCA GCCCGCGTCC 
GCGCCGATCG TCGCGAGCAA CGGCCAGCCG GCCGGCCCGG CCGCGACGCC CGTCAGCGAC 
CGCAAGGATT CGACGACGAA CTACGAGCTC GACAAGACCG TGCGGCACGT CGAGCAATCG 
ATGGGCACGA TCAAGCGGCT GTCGGTCGCG GTGGTCGTCA ACTATCAGCC GAGCACCGAC 
GCGAAGGGCC GCGTGACGAT GCAGCCGCTC GCCGCGGACA AGCTCGCGCA GGTCCAGCAG 
CTCGTGAAAG ACGCGATGGG CTACGACGAG AAGCGCGGCG ATTCGGTCAA CGTCGTCAAC 
AGCGCGTTCT CGGCCGCGGC CGATCCGTTC GCGAACCTGC CGTGGTGGCG CCAGCCGGAC 
ATGATCGAAC TCGGCAAGGA CATCGCGAAA TGGCTGGGCG TCGCCGCGGC GGCCGCCGCG 
CTGTACTTCA TGTTCGTGCG CCCGGCGCTG CGCCGCGCGT TCCCGCCGCC CGCGGAGCCC 
GCGGCGGCCG CCGTGCCGGC GCTCGACGGC CCGGACGACA TGCTCGCGCT CGACGGCCTG 
CCGAGCCCCG ACAAGAAGCA GCTTGCCGAG GAGGACGAAG AGCATCCGGC GCTCCTCGCC 
TTCGAAAACG AGAGGAACCG CTACGAACGC AATCTCGACT ACGCGCGCAC GATCGCGCGC 
CAGGATCCGA AGATCGTCGC AACCGTCGTG AAGAACTGGG TGTCCGATGA ACGCTGA 

 

Protein sequence

MDSQANSLIN PDARSSLAGA SPQAAAAAGA LPGAAAGGAD FGLGGFAERI PGLSRMKTNP 
RLPFLIGAAL AIAAIVALVL WSRAPDYRVL YSNLSDRDGG AIIAALQQAN VPYKFADAGG 
AILVPANQVH ETRLKLAAMG LPKGGSVGFE LMDNQKFGIS QFAEQVNYQR ALEGELQRTV 
ESSNAVRAAR VYLAIPKPSV FVRDREAPSA SVLVDLYPGR VLDEGQVLAV TRMVSSSVPD 
MPAKNVTIVD QDGNLLTQTA SATGLDASQL KYVQQIERNT QKRIDAILAP IFGAGNARSQ 
VSADVDFSKI EQTSESYGPN GTPQQSAIRS QQTSSSTELA QSGASGVPGA LSNTPPQPAS 
APIVASNGQP AGPAATPVSD RKDSTTNYEL DKTVRHVEQS MGTIKRLSVA VVVNYQPSTD 
AKGRVTMQPL AADKLAQVQQ LVKDAMGYDE KRGDSVNVVN SAFSAAADPF ANLPWWRQPD 
MIELGKDIAK WLGVAAAAAA LYFMFVRPAL RRAFPPPAEP AAAAVPALDG PDDMLALDGL 
PSPDKKQLAE EDEEHPALLA FENERNRYER NLDYARTIAR QDPKIVATVV KNWVSDER