| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A2842 |
|---|
| Symbol | trmE |
|---|
| ID | 4680140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008785 |
|---|
| Strand | - |
|---|
| Start bp | 2820816 |
|---|
| End bp | 2822282 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639847100 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_994136 |
|---|
| Protein GI | 121598239 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00155334 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACATTCA AGGATATCCG CGGTTTCTTT GATTTCCATT TCATTTATTT CAGATTTTTT
GCCATGCTCG CCACTGATTC CGATCCGATC GTCGCCATTG CCACCGCGTC AGGCCGAGGC
GGGATCGGCG TCGTGCGCCT TTCGCTCGGG CGAGCGGGGG AAGCGGCGGC GCGCGCGCTG
AGCGATGCGC TGTGCGGTGC GCGACTCATG CCGAGGCATG CGAGCTACGT GCCGTTTCTC
GACGGCGCGG GCGAGCCGCT CGATCGCGGC ATCGCGCTCT ATTTCCCCGC GCCGCATTCG
TATACGGGCG AGCACGTGAT CGAGCTGCAA GGCCACGGCG GGCCGATCGT GCTGCAGCTC
TTGCTGCAGC GCTGCCTCGA CGCCGGGCGT GCGCATGGGC TGCGGCTCGC TGAGCCGGGC
GAATTCACGC GCCGGGCGTT CCTGAACGAC AAGCTCGACC TCGCGCAGGC GGAGGCCGTC
GCCGATCTGA TCGAGGCGAG CACCGAGGCG GCTGCGCGTT CGGCGGGCCG CTCGCTCGAC
GGGGCGTTCT CGCGCGACAT CCATGCGCTC GTCGACGACG TGATCGCGCT GCGGATGCTC
GTCGAGGCGA CGCTCGATTT TCCGGAGGAG GAGATCGACT TCCTGGAGGC GGCCGACGCG
CGCGGCAAGC TCGCGCACAT CCGCGAGCGG CTCGCGCACG TGCTCGGCGA CGCGCGGCAG
GGGGCGTTGT TGCGCGAGGG GCTATCGGTC GTGCTTGCCG GGCAGCCGAA CGTCGGCAAG
TCGTCGCTGT TGAATGCGCT TGCGGGCGCG GAACTGGCGA TCGTCACGCC GATCGCCGGC
ACGACGCGCG ACAAGGTTGC GCAGACGATT CAGATCGAGG GCATTCCGTT GCACATTATC
GATACGGCGG GCTTGCGCGA AACGGAGGAC GAGGTCGAGA AGATCGGCAT CGCGCGCACG
TGGGGCGAGA TCGAGCGGGC GGACGTCGTG CTGCACCTGC TCGATGCGAG AAGCGGGCTT
GGCCCGGGCG ACGAGGCGAT CGCCGCGCGC TTCCCGGACG GCGTGCCGGT GGTGCGCGTG
CTGAACAAGA CGGATCTGAC GGGCGCGCCG GCATCGGTGA CGCGGACAGG CGGCGGCGCG
GCGCGCGCGG ACGTATGTGA AGTGCGGCTG TCGGCGAAGC GCGGCGACGG GATCGATTTG
CTGCGCGGCG AGCTGCTGCG GATCGCCGGT TGGCAGGCGG GTGCGGAAAG CGTGTATCTC
GCCCGCGAGC GGCATCTGAT CGCGCTGCGC GCGGCGCAGG CGCATCTCGC GCGGGCGGCG
GAGCACGCGG AGCAGAATGC GCAGGCGCTG GATCTCTTCG CCGAGGAACT GCGGCTCGCG
CAGGAGCGGC TTAATTCGAT CACCGGGGAG TTTACGTCCG ATGATTTGTT GGGGGTGATT
TTTAGTCGGT TTTGTATCGG AAAATAA
|
|---|
| Protein sequence | MTFKDIRGFF DFHFIYFRFF AMLATDSDPI VAIATASGRG GIGVVRLSLG RAGEAAARAL
SDALCGARLM PRHASYVPFL DGAGEPLDRG IALYFPAPHS YTGEHVIELQ GHGGPIVLQL
LLQRCLDAGR AHGLRLAEPG EFTRRAFLND KLDLAQAEAV ADLIEASTEA AARSAGRSLD
GAFSRDIHAL VDDVIALRML VEATLDFPEE EIDFLEAADA RGKLAHIRER LAHVLGDARQ
GALLREGLSV VLAGQPNVGK SSLLNALAGA ELAIVTPIAG TTRDKVAQTI QIEGIPLHII
DTAGLRETED EVEKIGIART WGEIERADVV LHLLDARSGL GPGDEAIAAR FPDGVPVVRV
LNKTDLTGAP ASVTRTGGGA ARADVCEVRL SAKRGDGIDL LRGELLRIAG WQAGAESVYL
ARERHLIALR AAQAHLARAA EHAEQNAQAL DLFAEELRLA QERLNSITGE FTSDDLLGVI
FSRFCIGK
|
|---|
| |