| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A2334 |
|---|
| Symbol | ilvD |
|---|
| ID | 4681040 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008785 |
|---|
| Strand | + |
|---|
| Start bp | 2338465 |
|---|
| End bp | 2340138 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639846597 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_993643 |
|---|
| Protein GI | 121600757 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00290796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTACA ACCGCCGCTC GAAGAACATC ACGCAAGGCG TGGCCCGTTC GCCGAACCGC
TCGATGTATT ACGCGCTCGG CTATCAGAAG GAAGATTTCG ACAAGCCGAT GATCGGCATC
GCGAACGGCC ACTCGACGAT CACGCCGTGC AACGCGGGCC TGCAGCGTCT GTCGGACGCC
GCCGTCGCGG CCGTCAAGGA CGCCGGCGCG AATCCGCAGA TCTTCGGCAC GCCGACGATC
TCGGACGGCA TGTCGATGGG CACCGAAGGG ATGAAGTACT CGCTCGTGTC GCGCGAGGTG
ATCGCCGATT GCATCGAGAC CTGCGTGCAG GGCCAATGGA TGGACGGCGT CGTCGTCGTG
GGCGGCTGCG ACAAGAACAT GCCGGGCGGC ATGATCGCGC TCGCGCGGAT CAACGTGCCG
GGCATCTACG TGTACGGCGG CACGATCCGC CCCGGCCACT GGAAAGGCCA CGACCTGACG
ATCGTGTCGT CGTTCGAGGC GGTCGGCGAG TTCACCGCCG GACGCATGTC GCAGGAGGAT
TTCGAAGGGG TCGAAAAGAA CGCGTGCCCG ACGACGGGCT CGTGCGGCGG CATGTATACC
GCGAACACGA TGAGCTCGTC GTTCGAGGCG CTCGGCATGT CGCTGCTGTA CTCGTCGACG
ATGGCCAATC CCGATCAGGA GAAGGTCGAT TCGGCGGCGG AATCGGCGCG CGTGCTGGTC
GAGGCGGTGA AGAAGGACCT GAAGCCGCGC GACATCATCA CGAAGCAGTC GATCGAGAAC
GCGGTGTCGG TCATCATGGC CACGGGCGGC TCGACCAACG CGGTGCTCCA CTATCTGGCG
ATCGCGCACG CGGCCGAGAT CGACTGGTCG ATCGAGGATT TCGAGCGCAT CAGGAAGCGC
GTGCCGGTGA TTTGCGACCT GAAGCCGTCG GGCCAGTACG TCGCGACCGA TCTGCACGCG
GCGGGCGGCA TTCCGCAGGT GATGAAGCTG CTGCTCGACG CGGGCCTGCT GCACGGCGAC
TGCATGACGA TCACGGGCCG CACGCTCGCC GAGGAGCTGA AGGACGTGCC GAGCGTGCCG
CGCGCCGATC AGAAGGTGAT CCATCCGATC GACCAGGCGC TGTACAAGGA AGGCCACCTC
GCGATCCTGA AGGGCAACCT CGCCGAGGAC GGCGCGGTCG CGAAGATCAC CGGCCTGAAG
AACCCGGTCA TCACCGGCCC GGCGCGCGTG TTCGACGACG AGCAGAGCGC GCTCGCCGCG
ATCCTCGACG ACAGGATCCG CGCGGGCGAC GTCGTCGTGC TGCGCTACCT CGGCCCGCAA
GGCGGCCCGG GGATGCCCGA GATGCTCGCG CCGACATCGG CGATCATCGG CAAGGGCCTC
GGCGAATCGG TCGGCCTGAT CACCGACGGC CGCTTCTCCG GCGGCACGTG GGGGATGGTG
GTCGGCCACG TCGCGCCGGA AGCGTTCGTC GGCGGCACGA TCGCGCTCGT GCAGGAAGGC
GATTCGATCA CGATCGACGC GCACAAGCTG CTGCTGCAAT TGAACGTCGA CGACGCCGAA
CTCGCGCGCC GCCGCGCCGC ATGGAAGCAG CCGGCGCCGC GCTACACGCG CGGCGTGCTC
GCGAAGTACG CGGCGCTCGC CCGCCCGGCG AACCAGGGCG CCGTCACGGG CTGA
|
|---|
| Protein sequence | MSYNRRSKNI TQGVARSPNR SMYYALGYQK EDFDKPMIGI ANGHSTITPC NAGLQRLSDA
AVAAVKDAGA NPQIFGTPTI SDGMSMGTEG MKYSLVSREV IADCIETCVQ GQWMDGVVVV
GGCDKNMPGG MIALARINVP GIYVYGGTIR PGHWKGHDLT IVSSFEAVGE FTAGRMSQED
FEGVEKNACP TTGSCGGMYT ANTMSSSFEA LGMSLLYSST MANPDQEKVD SAAESARVLV
EAVKKDLKPR DIITKQSIEN AVSVIMATGG STNAVLHYLA IAHAAEIDWS IEDFERIRKR
VPVICDLKPS GQYVATDLHA AGGIPQVMKL LLDAGLLHGD CMTITGRTLA EELKDVPSVP
RADQKVIHPI DQALYKEGHL AILKGNLAED GAVAKITGLK NPVITGPARV FDDEQSALAA
ILDDRIRAGD VVVLRYLGPQ GGPGMPEMLA PTSAIIGKGL GESVGLITDG RFSGGTWGMV
VGHVAPEAFV GGTIALVQEG DSITIDAHKL LLQLNVDDAE LARRRAAWKQ PAPRYTRGVL
AKYAALARPA NQGAVTG
|
|---|
| |