| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A2060 |
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| Symbol | |
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| ID | 4681865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia mallei SAVP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008785 |
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| Strand | + |
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| Start bp | 2033675 |
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| End bp | 2035354 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 639846324 |
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| Product | RNA pseudouridine synthase family protein |
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| Protein accession | YP_993376 |
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| Protein GI | 121601596 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.239559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCGTCA AGAATCCGCG CCCGGCGACG CCCGGCCGCG CCCCCGTCCG CTCCGGCAGC
CTCACCGCGC GCAAGGTCGC GCGGCCCGAC CCGAAAGCGG CGGGCGCAAA ACCCGCCGCG
GCGAAGCCTG CTGCGAAGTC CGCATCGGCT GCCAAGCCGG CGGCGCCGCG CAGCGCGGCG
AACGCTGCGC CGAAGCGCGC GCCGGGGCCG TCGCGCCCGG CCGCGGCATC GGAAGGCAAG
CGCGTCGCGA AGCCGCGCAC CGCGCACGAC GCCGGCCGCA CGGGCGGCGA GCGTGCGCCG
GCCAAGCGCG CCACCACGCC CGGCGCGGCG TCCGCGCCGC GCACGCGCCG CACCGACGCG
AAGCCGGCGC GCCGCACCAA CGAACGCCCT GCCGGCCGCG ACGAGCGTGC ACCGCGCGAC
TCGGATGCGC GCGCGTTCGA TGTGGGCACG CGCGGTAAGG ACCGCGCGCC CCGCGAGGGC
GCAAGGCCCG GCGCACGGGG CGCGACGGGC GCGAAGTTCG GCGGCGCGGC GCGTCGATCG
GACGACGCCG ACCGTCGAAC GCCCCGCGCG ACGCGTGCGG ACAGCCGCGC GCGCGATGCC
GCGCCGTCGT CGTTCGCGGG CAAGACCGCG ACAGCCGGCA AGCGTGCGCC GCAGCGCGCC
GACGATCGCT ACGGCGCAGC CGGGAAGCGC ACATCGCCGC GCACCGAGCG AACCGAGCGA
ACCGAGCGCC CCGCCCGCTT CGGCGAACGG CCGGCCACCC GCGCGAGCGC ATCCGGCGAG
CGCCGCCCCA CGGCCCGCGC GGCGACGGGT TCGCGCCTCA AGCTCGCGCA GCCGATCAAG
CGCGGCAGCG GCGAACTGGG CGAATCCGCT CGCGGCGGTG AGCACGGCGA ACGCGGCAAG
CGTATCGAGC GCGGCGACGA AACCGGCCTC GTGCGCCTGT CGAAGCGCAT GTCGGAGCTG
GGTCTCTGCT CGCGCCGCGA AGCAGACGAA TGGATCGAGA AAGGCTGGGT GCTCGTCGAC
GGCGAGCGCA TCGACACGCT CGGCACGAAG GTGCGCGCCG ACCAGCGCAT CGAGATCGAT
TCGAACGCGC GCGCCGCGCA GGCCGCGCAA GTGACGATCC TGCTGCACAA GCCGGTGGGC
TACGTGTCGG GCCAGGCGGA GGACGGCTAC GCCCCCGCCG CGACGCTCGT CACGCGCGAG
AACCACTGGA GCGGCGACCG CTCGCCGCTG CGCTTCTCGC CGCAGCACCT GCGCGCGCTC
GCGCCCGCGG GCCGGCTCGA CATCGATTCG ACGGGCCTTC TCGTGCTGAC GCAGAACGGG
CGCGTCGCGA AACAGCTGAT CGGCGAACAA TCGGACATCG ACAAGGAATA CCTGGTGCGC
GTGCGCTTCG GCGAGCGCAC GGCCGACATC GAACGCCACT TCCCCGCCGA GTCGCTCGCG
AAGCTGCGCC ACGGCCTCGA GCTCGACGGC GTGCCGCTCA AGCCCGCGAT GGTCAGTTGG
CAGAACGGCG AGCAACTGCG CTTCGTGCTG CGCGAAGGCA AGAAGCGCCA GATTCGCCGG
ATGTGCGAAC TCGTCGGCCT CGAGGTGATC GGCCTGAAGC GCGTGCGGAT GGGCCGCGTG
ATGCTGGGCG CGCTGCCGCA AGGCGAGTGG CGCTATCTCG GGCCGGACGA ATCGTTCTGA
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| Protein sequence | MTVKNPRPAT PGRAPVRSGS LTARKVARPD PKAAGAKPAA AKPAAKSASA AKPAAPRSAA
NAAPKRAPGP SRPAAASEGK RVAKPRTAHD AGRTGGERAP AKRATTPGAA SAPRTRRTDA
KPARRTNERP AGRDERAPRD SDARAFDVGT RGKDRAPREG ARPGARGATG AKFGGAARRS
DDADRRTPRA TRADSRARDA APSSFAGKTA TAGKRAPQRA DDRYGAAGKR TSPRTERTER
TERPARFGER PATRASASGE RRPTARAATG SRLKLAQPIK RGSGELGESA RGGEHGERGK
RIERGDETGL VRLSKRMSEL GLCSRREADE WIEKGWVLVD GERIDTLGTK VRADQRIEID
SNARAAQAAQ VTILLHKPVG YVSGQAEDGY APAATLVTRE NHWSGDRSPL RFSPQHLRAL
APAGRLDIDS TGLLVLTQNG RVAKQLIGEQ SDIDKEYLVR VRFGERTADI ERHFPAESLA
KLRHGLELDG VPLKPAMVSW QNGEQLRFVL REGKKRQIRR MCELVGLEVI GLKRVRMGRV
MLGALPQGEW RYLGPDESF
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