| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A2009 |
|---|
| Symbol | |
|---|
| ID | 4678869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008785 |
|---|
| Strand | - |
|---|
| Start bp | 1984390 |
|---|
| End bp | 1985922 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639846273 |
|---|
| Product | NCS1 nucleoside transporter family protein |
|---|
| Protein accession | YP_993325 |
|---|
| Protein GI | 121599748 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1953] Cytosine/uracil/thiamine/allantoin permeases |
|---|
| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCG CGCGGCTCGT CCGCGGCAGG CAAGGAGATG TCATGGCTCA GTTCAGTGTG
GCGCGGCAAA GCGCCTCGTA TCGGCCGAAC GAGGATCGCG CCGGCGGCCC GGATGGCGGC
GCTCAGATGC CCGCCGGCTA CAGCAGTCGT CTGTACAACG AAGATCTCGC GCCGCTCGCG
AGCCAGCGCT GGGGCGCATA CAACATCTTC GCGTTCTGGA TGTCGGACGT GCACAGCGTC
GGCGGCTACG TGTTTGCGGG CAGCCTGTTC GCGCTCGGTC TGACGAGCTG GCAGGTGCTC
GTCGCGCTGA TCGTCGGCAT TTCGATCGTC AACGTGCTGT GCAACCTGAT CGCGAGGCCG
AGCCAGCAGC TAGGCGTGCC GTATCCGGTG GCATGCCGCG CGACGTTCGG CGTGCTCGGC
GCGAACGTGC CCGCGGTGAT CCGCGGCCTC ATCGCGATCG CATGGTACGG CATCCAAACT
TATCTGGCGT CGAGCGCGCT CGTGATCGTC GTGCTCAAGT TCTTTCCGCA CTGGATGCCG
TACGCGGACG TGCATCGCTA CGGCTTTCTC GGGCTGTCGG CGCTCGGCTG GGCGGGCTTC
ATGCTGCTGT GGGTGCTGCA GGCGTTCGTG TTCTGGAACG GCATGGAGAC GATCAAGAAG
TTCATCGATT TCGCCGGCCC CGCCGTCTAC GTGGTGATGT TCGCCCTCGC GGGCTACATG
GTATGGCGCG CGGGCTGGCG CAATATCGGC CTGAATCTCG GCGGCGTCCG GTATCACGGC
GCCGAAGTGA TTCCGGTGAT GGTGACGGCG ATCTCGCTCG TCGTGTCGTA TTTCTCGGGG
CCGATGCTCA ACTTCGGCGA TTTCTCGCGT TATTGCAGCA GCTACGGCGG CGTGAAGCGC
GGCAATTTCT GGGGGCTGCC CGTCAATTTC CTCGCGTTCT CGCTCGTCAC CGTGATCACG
ACGGCCGCGA CGCTGCCGGT GTTCGGAGAA CTGATCACCG ATCCCGTCGA GACGGTCGGG
CGCATCGATC ATCCGAGCGC CGTGATACTT GGGGCGCTAA CCTTCACGAT CGCGACGATC
GGCATCAACA TCGTCGCGAA TTTCGTGTCG CCCGCGTTCG ATTTCTCGAA CGTCGCGCCG
CGCCTGATCA GTTGGCGCGC GGGCGGGATG CTCGCGGCGG TCGCATCGGT GTTCATCACG
CCGTGGAATC TCTTCAACAA TCCCGCGGTG ATCCATTACA CGCTCGACGT GCTCGGCGGC
TTCATCGGGC CGCTGTACGG CGTGCTGATC GTCGATTTCT ATCTCGTGAA GCGCGGCGCG
CTGCGGCGCG ACGATCTGTA CACGACGTCG GCCGACGGCG CGTACTGGTA TCGCGACGGC
GTGAACCGGC GCGCGATCGC CGCGCTGTTG CCCGCGGCCG CGATCGCCGT CGCATGCGTG
ATGGCGCCCG CGCTGTCCGG GCTCGCGAAT TTCTCGTGGT TCATCGGCGC GGCGCTCGGC
GGCGCGTTCT ATCGCGCGCT CGCGAAAGCA TGA
|
|---|
| Protein sequence | MTIARLVRGR QGDVMAQFSV ARQSASYRPN EDRAGGPDGG AQMPAGYSSR LYNEDLAPLA
SQRWGAYNIF AFWMSDVHSV GGYVFAGSLF ALGLTSWQVL VALIVGISIV NVLCNLIARP
SQQLGVPYPV ACRATFGVLG ANVPAVIRGL IAIAWYGIQT YLASSALVIV VLKFFPHWMP
YADVHRYGFL GLSALGWAGF MLLWVLQAFV FWNGMETIKK FIDFAGPAVY VVMFALAGYM
VWRAGWRNIG LNLGGVRYHG AEVIPVMVTA ISLVVSYFSG PMLNFGDFSR YCSSYGGVKR
GNFWGLPVNF LAFSLVTVIT TAATLPVFGE LITDPVETVG RIDHPSAVIL GALTFTIATI
GINIVANFVS PAFDFSNVAP RLISWRAGGM LAAVASVFIT PWNLFNNPAV IHYTLDVLGG
FIGPLYGVLI VDFYLVKRGA LRRDDLYTTS ADGAYWYRDG VNRRAIAALL PAAAIAVACV
MAPALSGLAN FSWFIGAALG GAFYRALAKA
|
|---|
| |